lackeylela / openASOLinks
openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.
☆10Updated 4 years ago
Alternatives and similar repositories for openASO
Users that are interested in openASO are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆97Updated 6 months ago
- High Resolution Melt Analysis in Python☆21Updated 3 years ago
- A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.☆28Updated 2 years ago
- Protein 3D structure prediction pipeline☆91Updated last month
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆64Updated last year
- Python Client Package for WikiPathways☆22Updated last week
- An RNA manipulation library.☆56Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- Predict the structure of immune receptor proteins☆56Updated last year
- nucleic acid folding☆108Updated 4 months ago
- Associate pathways + gene ontologies with significant genes.☆10Updated 2 years ago
- A multiple sequence alignment viewer☆24Updated last month
- Deep networks for protein functional inference☆180Updated 2 weeks ago
- a collection of colabs useful for molecular biology☆31Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- GPrimer: a fast GPU-based pipeline for primerdesign for qPCR experiments☆11Updated 6 months ago
- Draw RNA secondary structures in python.☆49Updated 5 months ago
- MMseqs2 app to run on your workstation or servers☆100Updated last month
- Evolutionary velocity with protein language models☆94Updated last week
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 9 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- Protein structure comparison tools such as SSAP and SNAP☆66Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆134Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆85Updated last week
- ☆81Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆50Updated 3 months ago
- Unified biological sequence manipulation in Python☆207Updated last year
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆43Updated last year