Alternatives and similar repositories for openASO

Users that are interested in openASO are comparing it to the libraries listed below

• hmdlab / raptgen
  ☆26Updated 2 years ago
• liuyigh / PyHRM
  High Resolution Melt Analysis in Python
  ☆21Updated 3 years ago
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆23Updated last month
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆65Updated last year
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆98Updated 6 months ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆140Updated last year
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• latch-verified / pathway
  Associate pathways + gene ontologies with significant genes.
  ☆10Updated 2 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆39Updated 2 years ago
• drivenbyentropy / aptasuite
  A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
  ☆28Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆92Updated 3 weeks ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 6 months ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆208Updated last year
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆218Updated 4 months ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆182Updated this week
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆127Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆109Updated 4 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆59Updated 3 weeks ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆188Updated last year
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆17Updated 3 years ago
• eternagame / DegScore
  Arnie-based DegScore tool.
  ☆27Updated 3 years ago
• bowang-lab / Orthrus
  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…
  ☆85Updated last month
• chenkenbio / SpliceBERT
  Primary RNA sequence model
  ☆41Updated last year
• jackievaleri / BioAutoMATED
  Automated machine learning for analyzing, interpreting, and designing biological sequences
  ☆173Updated 2 years ago
• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 3 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• deepgenomics / GenomeKit
  A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations
  ☆56Updated last month
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆83Updated last year