hexavier / CUSTOM
Codon optimizer for tissue-specific expression
☆17Updated 7 months ago
Alternatives and similar repositories for CUSTOM
Users that are interested in CUSTOM are comparing it to the libraries listed below
Sorting:
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆42Updated 3 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆45Updated 5 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- ☆10Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last month
- Python package and command line tool for epitope prediction☆51Updated 9 months ago
- HLA-I ligand predictor☆39Updated 4 months ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆73Updated last year
- Feature map and function annotation of Proteins☆33Updated 11 months ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆10Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 9 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated last month
- Multi-Species Codon Optimization Engine☆27Updated last year
- ☆65Updated 2 months ago
- Code for 5UTR project☆24Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆39Updated last year
- Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology☆15Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆18Updated 11 months ago
- Evolutionary velocity with protein language models☆90Updated last year
- ☆30Updated last year
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 2 years ago