Alternatives and similar repositories for CUSTOM

Users that are interested in CUSTOM are comparing it to the libraries listed below

• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆39Updated last week
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆14Updated 5 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• kad-ecoli / python_scripts
  scripts for parsing PDB, fasta, and GO
  ☆16Updated 3 years ago
• ntranoslab / esm-variants
  ☆74Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆40Updated 6 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated 2 weeks ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆87Updated 4 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆32Updated 9 months ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated 2 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 10 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆38Updated 9 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• nleroy917 / optipyzer
  Multi-Species Codon Optimization Engine
  ☆27Updated last year
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• briney / abtools
  Analysis of antibody NGS data
  ☆12Updated 3 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆44Updated 3 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆51Updated 3 months ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 3 years ago
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆40Updated last year
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated last month
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 10 months ago