ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
☆15May 20, 2022Updated 4 years ago
Alternatives and similar repositories for ViennaRNA
Users that are interested in ViennaRNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated last year
- Differentiable RNA folding in JAX☆30Mar 25, 2025Updated last year
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated 2 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for 5UTR project☆26May 20, 2023Updated 3 years ago
- Eterna100-V2 benchmarking results and scripts☆14May 19, 2026Updated last month
- Public repository for ShapeMapper 2 releases☆44Mar 27, 2026Updated 3 months ago
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- A Prot paper related materials☆11Sep 5, 2022Updated 3 years ago
- Sequence-based protein solubility predictor☆11Apr 1, 2020Updated 6 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆111Nov 20, 2025Updated 7 months ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year
- ☆16May 21, 2017Updated 9 years ago
- HELM2NotationToolkit is the reference implementation of the new HELM 2 standard with support for ambiguous structures.☆11May 24, 2023Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- Re-implementation of GP-GOMEA that attempts to be simpler to understand and use than the original.☆15Mar 31, 2026Updated 3 months ago
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 5 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Jun 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The ViennaRNA Package☆417Feb 24, 2026Updated 4 months ago
- The inverse materials design is a key topic of materials science nowadays. The proposed software solutions are useful tools for decision …☆11Jul 15, 2020Updated 5 years ago
- DOM Text Based Multiple Sequence Alignment Library☆20Jul 9, 2019Updated 7 years ago
- Automatic prototype based drug generation☆13Feb 13, 2018Updated 8 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆47May 22, 2025Updated last year
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆56May 5, 2025Updated last year
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated last month
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆85Jun 29, 2026Updated last week
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Jun 27, 2026Updated last week
- A web based application predicts water solubility of any given chemical compound known or unknown☆14Jul 4, 2021Updated 5 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 8 months ago