ayaanhossain / ViennaRNALinks
ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
☆14Updated 3 years ago
Alternatives and similar repositories for ViennaRNA
Users that are interested in ViennaRNA are comparing it to the libraries listed below
Sorting:
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- ☆18Updated 11 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆33Updated 2 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- ☆74Updated last year
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆11Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Protein Sequence Annotation with Language Models☆22Updated 3 weeks ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆38Updated 9 months ago
- ☆30Updated last year
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆21Updated this week
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆45Updated 3 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- ☆36Updated 5 months ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- scripts for parsing PDB, fasta, and GO☆16Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated 2 weeks ago
- ☆18Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Template-based RNA secondary structure visualization☆26Updated 7 months ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆13Updated last week
- Fast protein domain structure embedding+search tool☆21Updated last month
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 6 years ago