ayaanhossain / ViennaRNA
ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
☆14Updated 2 years ago
Alternatives and similar repositories for ViennaRNA:
Users that are interested in ViennaRNA are comparing it to the libraries listed below
- Code for LazyAF pipeline☆20Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated last week
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆11Updated 9 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆20Updated last month
- ☆73Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- a collection of colabs useful for molecular biology☆31Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated this week
- Evolutionary conservation estimation of residues or nucleotides☆39Updated 3 years ago
- HLA-I ligand predictor☆37Updated 4 months ago
- ☆16Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆48Updated 8 months ago
- ColabFold protocol☆50Updated 6 months ago
- Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology☆14Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 2 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆21Updated 2 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Fast protein domain structure embedding+search tool☆16Updated 3 weeks ago