ayaanhossain / ViennaRNALinks
ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
☆14Updated 3 years ago
Alternatives and similar repositories for ViennaRNA
Users that are interested in ViennaRNA are comparing it to the libraries listed below
Sorting:
- Code for LazyAF pipeline☆21Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆11Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆31Updated 2 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆17Updated 2 weeks ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Updated 2 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 4 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- DeepECtransformer☆28Updated 2 years ago
- Fast and accurate protein structure prediction☆56Updated 9 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆14Updated 6 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Comprehensive Python client for the Uniprot REST API☆52Updated last month
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 7 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year