WangShuxiong / SoptSCLinks
SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
☆22Updated 4 years ago
Alternatives and similar repositories for SoptSC
Users that are interested in SoptSC are comparing it to the libraries listed below
Sorting:
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆27Updated 5 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆44Updated 3 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆26Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- The Software of UnionCom Algorithm☆25Updated last year
- ☆21Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Gene expression deconvolution using dampened weighted least squares☆29Updated 4 years ago
- cTPnet Package☆25Updated 3 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- ☆45Updated last month
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- code and dataset for spatialDWLS☆13Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- ☆31Updated 6 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago