WangShuxiong / SoptSCLinks
SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network from scRNA-seq data.
☆22Updated 4 years ago
Alternatives and similar repositories for SoptSC
Users that are interested in SoptSC are comparing it to the libraries listed below
Sorting:
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆27Updated 5 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 3 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- ☆21Updated last year
- The Software of UnionCom Algorithm☆25Updated last year
- ☆44Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆17Updated 10 months ago
- Neural Crest Fate Decisions☆11Updated 6 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- ☆26Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last month
- ☆12Updated 2 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 3 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- ☆58Updated 2 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 11 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated last year
- Gene expression deconvolution using dampened weighted least squares☆30Updated 4 years ago
- Spatially resolved transcriptomic analysis☆61Updated 2 years ago