Alternatives and similar repositories for SoptSC:

Users that are interested in SoptSC are comparing it to the libraries listed below

• zhanglhbioinfor / DIRECT-NET
  ☆10Updated last year
• mkarikom / RSoptSC
  Cell-cell communication and lineage inference for scRNA-seq data
  ☆23Updated last year
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• PeterZZQ / scMoMaT
  ☆21Updated 9 months ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆26Updated 5 years ago
• yycunc / SAFEclustering
  SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆17Updated 4 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• QuKunLab / WEDGE
  Imputation of single cell sequencing data
  ☆9Updated 4 years ago
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆29Updated 4 years ago
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆41Updated 6 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 3 years ago
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆27Updated last year
• dtsoucas / DWLS
  Gene expression deconvolution using dampened weighted least squares
  ☆26Updated 4 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 6 months ago
• gitter-lab / SINGE
  Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
  ☆11Updated 8 months ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆31Updated last year
• caokai1073 / UnionCom
  The Software of UnionCom Algorithm
  ☆25Updated 8 months ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆14Updated 3 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• msraredon / Connectome
  ☆28Updated 2 years ago
• dyxmvp / Spatial_ATAC-seq
  ☆21Updated 2 years ago
• Pinlyu3 / IReNA-v2
  Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data
  ☆12Updated 3 years ago
• JSB-UCLA / scPNMF
  ☆13Updated last year
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆26Updated last year
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆25Updated last year