simonwm / tacco
TACCO: Transfer of Annotations to Cells and their COmbinations
☆44Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for tacco
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- ☆26Updated 10 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆95Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆53Updated 6 months ago
- ☆32Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated last month
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- ☆37Updated 3 weeks ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆25Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- Single cell omics biology annotations☆48Updated last month
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 2 weeks ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆19Updated 3 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- Join subcellular Visium HD bins into cells☆52Updated last week
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆58Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- BANKSY: spatial clustering☆73Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆58Updated 2 years ago