TACCO: Transfer of Annotations to Cells and their COmbinations
☆69Apr 21, 2026Updated 3 months ago
Alternatives and similar repositories for tacco
Users that are interested in tacco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- domain adaptation of spatial and single-cell transcriptome☆28Sep 21, 2024Updated last year
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 5 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆85Jul 4, 2026Updated 2 weeks ago
- Cross-attention-based cell-cell interaction inference from ST data.☆22Jul 1, 2026Updated 2 weeks ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆96May 9, 2026Updated 2 months ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆31Updated this week
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- The scripts used for the analyses in TOME project☆25Nov 28, 2025Updated 7 months ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Apr 7, 2026Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 8 months ago
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 4 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆201Jan 30, 2026Updated 5 months ago
- supplementary tables and files☆11Oct 13, 2023Updated 2 years ago
- ☆15Aug 17, 2023Updated 2 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference Genome Independent Differential DNA Methylation Analysis☆11Aug 19, 2021Updated 4 years ago
- ☆35Apr 8, 2023Updated 3 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- ☆49Feb 14, 2024Updated 2 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆126Apr 20, 2026Updated 3 months ago
- CELLama Project☆23Nov 15, 2025Updated 8 months ago
- Data analysis for the moscot-framework project☆25Feb 27, 2026Updated 4 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆100Dec 8, 2022Updated 3 years ago
- Spatial omics analysis toolbox☆383Jun 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 5 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated last year
- ☆27Dec 25, 2023Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆42Mar 20, 2023Updated 3 years ago