TACCO: Transfer of Annotations to Cells and their COmbinations
☆71Apr 21, 2026Updated 4 months ago
Alternatives and similar repositories for tacco
Users that are interested in tacco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Updated this week
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 7 months ago
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last week
- domain adaptation of spatial and single-cell transcriptome☆28Sep 21, 2024Updated last year
- A Snakemake pipeline for Xenium data analysis.☆28Jul 22, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 10 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆95Jul 4, 2026Updated 2 months ago
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆203Jan 30, 2026Updated 7 months ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆485Jan 22, 2026Updated 7 months ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 5 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated 2 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆134Updated this week
- Spatiotemporal modeling of spatial transcriptomics☆344Feb 25, 2026Updated 6 months ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆46Aug 24, 2026Updated 3 weeks ago
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Join subcellular Visium HD bins into cells☆143Updated this week
- ☆10Sep 27, 2022Updated 3 years ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆100May 9, 2026Updated 4 months ago
- ☆15Aug 17, 2023Updated 3 years ago
- ☆36Aug 3, 2026Updated last month
- The scripts used for the analyses in TOME project☆26Nov 28, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BANKSY: spatial clustering☆162May 30, 2026Updated 3 months ago
- ☆16Sep 29, 2023Updated 2 years ago
- ☆54May 18, 2026Updated 4 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆260Mar 14, 2026Updated 6 months ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated 7 months ago