Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
☆53Jun 6, 2025Updated last year
Alternatives and similar repositories for ItClust
Users that are interested in ItClust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆16Feb 25, 2017Updated 9 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆19May 5, 2021Updated 5 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- ☆101Oct 1, 2024Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-1…☆12Feb 20, 2021Updated 5 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- ☆17Sep 20, 2020Updated 5 years ago
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- ☆47Jun 21, 2019Updated 6 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆13Mar 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆154Jan 20, 2023Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Mar 31, 2022Updated 4 years ago
- Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Jun 17, 2021Updated 4 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Aug 29, 2019Updated 6 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- scGEAToolbox: Matlab toolbox for single-cell gene expression analyses☆30Updated this week
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆45Mar 30, 2024Updated 2 years ago