jianhuupenn / ItClust
Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
☆54Updated 3 years ago
Alternatives and similar repositories for ItClust:
Users that are interested in ItClust are comparing it to the libraries listed below
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆30Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆56Updated 2 years ago
- ☆83Updated 2 weeks ago
- overview of spatial datasets☆69Updated 10 months ago
- ☆21Updated 7 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆83Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆57Updated 7 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- ☆45Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆71Updated last year
- domain adaptation of spatial and single-cell transcriptome☆25Updated 3 months ago
- scDeepCluster for Single Cell RNA-seq data☆98Updated 6 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated 2 months ago
- cTPnet Package☆23Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Updated last month
- ☆48Updated 3 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆38Updated 4 years ago
- ☆114Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆58Updated last year
- Reproducing result from the paper☆33Updated 3 years ago
- spatial transcriptome, single cell☆66Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆31Updated 9 months ago