jianhuupenn / ItClust
Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
☆54Updated 3 years ago
Alternatives and similar repositories for ItClust:
Users that are interested in ItClust are comparing it to the libraries listed below
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆61Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 10 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 11 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- overview of spatial datasets☆75Updated last year
- ☆45Updated 2 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Updated 5 years ago
- scLearn:Learning for single cell assignment☆35Updated 4 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆70Updated 3 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- ☆119Updated 2 years ago
- ☆27Updated last year
- ☆56Updated 9 months ago
- scDeepCluster for Single Cell RNA-seq data☆101Updated 9 months ago
- ☆50Updated 4 years ago
- ☆48Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 2 months ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆103Updated last year
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆61Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆116Updated 8 months ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- UniCell Deconvolve Paper☆10Updated 2 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆80Updated 11 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago