using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
☆55Jun 15, 2021Updated 4 years ago
Alternatives and similar repositories for GCNG
Users that are interested in GCNG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆47Jul 24, 2025Updated 9 months ago
- ☆21Jun 29, 2022Updated 3 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆29Mar 2, 2020Updated 6 years ago
- Inferring disease-associated miRNAs☆10Mar 21, 2020Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- covolutional neural network based coexpression analysis☆79Jun 13, 2020Updated 5 years ago
- data for spacejam2☆18Aug 3, 2022Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- spatial transcriptome, single cell☆75Mar 18, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Jan 30, 2023Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 8 months ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆76Jan 17, 2025Updated last year
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- ☆45Dec 11, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated last month
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- ACTIONet single-cell analysis framework☆44Sep 16, 2024Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 2 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)☆25Dec 2, 2022Updated 3 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UHCA☆11Jan 23, 2025Updated last year
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 5 years ago
- The source code of the paper "Understanding Graph Neural Networks from Graph Signal Denoising Perspectives"☆23Jun 9, 2020Updated 5 years ago
- ☆17Mar 18, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆26Updated this week
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago