☆32May 19, 2019Updated 7 years ago
Alternatives and similar repositories for network_inference_tutorials
Users that are interested in network_inference_tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for inferring undirected networks from data☆47Mar 17, 2021Updated 5 years ago
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆71Jan 3, 2023Updated 3 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆50Dec 12, 2019Updated 6 years ago
- GOAT: efficient and robust identification of gene set enrichment☆16Jul 11, 2026Updated 3 months ago
- Functions for single cell data analysis☆35May 28, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BEELINE: evaluation of algorithms for gene regulatory network inference☆219Jul 11, 2026Updated 3 months ago
- ☆13Aug 6, 2025Updated last year
- ☆12Jun 10, 2024Updated 2 years ago
- ☆12May 30, 2023Updated 3 years ago
- ☆33Oct 4, 2021Updated 5 years ago
- ☆20Aug 28, 2026Updated 2 months ago
- ☆10Mar 12, 2023Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 4 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated last year
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆103Sep 24, 2021Updated 5 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)☆11May 5, 2021Updated 5 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 9 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 7 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"☆18Aug 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- ☆17Dec 21, 2022Updated 3 years ago
- ☆89Jun 24, 2023Updated 3 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 7 years ago
- Software to study why most genes are ignored☆16Sep 18, 2018Updated 8 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆71Apr 5, 2024Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Apr 14, 2026Updated 6 months ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆155Jan 20, 2023Updated 3 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- Gene Regulatory Graph Neural Networks☆37Jun 21, 2022Updated 4 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago