Alternatives and similar repositories for RVAgene

Users that are interested in RVAgene are comparing it to the libraries listed below

• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆18Updated last year
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 3 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• pqiu / cooccurrence_clustering
  ☆13Updated 5 years ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆17Updated 4 years ago
• cliffzhou92 / MuTrans-release
  ☆15Updated 3 years ago
• aforr / LineageOT
  ☆13Updated last year
• landau-lab / PATH
  ☆18Updated 10 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆32Updated 3 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆23Updated 5 months ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 3 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 5 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆71Updated last month
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆35Updated 2 years ago
• YosefLab / SymSim
  ☆26Updated 9 months ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated last year
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆32Updated this week
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• yachimura-lab / scEGOT
  ☆16Updated last month
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆52Updated 3 weeks ago
• jaleesr / BITFAM
  BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…
  ☆31Updated last month