maclean-lab / RVAgene
Recurrent Variational Auto gene encoder
☆20Updated 2 years ago
Alternatives and similar repositories for RVAgene:
Users that are interested in RVAgene are comparing it to the libraries listed below
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆16Updated 4 years ago
- Global Waddington-OT☆23Updated 7 months ago
- Non-parametric density inference for single-cell analysis.☆67Updated last week
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- ☆11Updated last year
- ☆15Updated 3 years ago
- Population balance analysis☆44Updated 5 years ago
- RNA velocity validation☆23Updated 3 years ago
- A method for analyzing scATAC-seq experiments.☆27Updated 2 weeks ago
- A python package for chromVAR☆27Updated last year
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- ☆18Updated last month
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆12Updated 9 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆22Updated 7 years ago
- ☆17Updated 7 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- ☆24Updated last year
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- ☆18Updated last year
- ☆14Updated last week
- ☆23Updated 2 months ago
- scVI extension for unspliced RNA☆16Updated 2 months ago