☆19Mar 11, 2024Updated 2 years ago
Alternatives and similar repositories for scRNA-seq
Users that are interested in scRNA-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- ☆17Aug 1, 2023Updated 2 years ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated 2 years ago
- ☆12May 14, 2024Updated 2 years ago
- All data and notebook for my 2020 scRNA-seq analysis workshop☆18Jul 27, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Jun 1, 2026Updated last week
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆24Jul 6, 2023Updated 2 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- ☆18May 15, 2025Updated last year
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆181Mar 11, 2026Updated 3 months ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Apr 14, 2026Updated last month
- ☆19Mar 8, 2023Updated 3 years ago
- Integration of gut cell atlases☆36May 6, 2026Updated last month
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- scDataviz: single cell dataviz and downstream analyses☆67Sep 24, 2021Updated 4 years ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆14Aug 8, 2025Updated 10 months ago
- ☆32Apr 9, 2022Updated 4 years ago
- ☆15Aug 22, 2016Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆41Mar 31, 2026Updated 2 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆59Mar 20, 2026Updated 2 months ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆14May 2, 2019Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆53Mar 21, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Sep 17, 2019Updated 6 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Jun 23, 2022Updated 3 years ago
- ☆14Mar 2, 2020Updated 6 years ago
- ☆40Aug 29, 2025Updated 9 months ago