molgenis / scRNA-seq
☆18Updated 11 months ago
Alternatives and similar repositories for scRNA-seq:
Users that are interested in scRNA-seq are comparing it to the libraries listed below
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 2 months ago
- ☆12Updated 7 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆14Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆31Updated 9 months ago
- ☆30Updated 3 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆24Updated 2 years ago
- ☆14Updated last year
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆15Updated 10 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆58Updated 4 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆16Updated last year
- A pipeline for scRNA-seq data analysis☆12Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- ☆14Updated last year
- The codes and files for the study of subsolid nodules (SSN).☆13Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago