hms-dbmi / dseqrLinks
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
☆20Updated last week
Alternatives and similar repositories for dseqr
Users that are interested in dseqr are comparing it to the libraries listed below
Sorting:
- ☆27Updated 7 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Gene-level general linear mixed model☆24Updated 3 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆23Updated this week
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆32Updated 5 years ago
- A General Framework for Consensus Partitioning☆65Updated this week
- Cancer Dependency Map package☆33Updated last year
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆42Updated last week
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Tools for assessing clustering robustness☆31Updated last week
- ☆38Updated 3 months ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 2 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆24Updated 3 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 8 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Fast motif matching in R☆46Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago