single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
☆20Jan 22, 2026Updated 2 months ago
Alternatives and similar repositories for dseqr
Users that are interested in dseqr are comparing it to the libraries listed below
Sorting:
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Single cell analysis in Javascript☆23Nov 28, 2025Updated 3 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated last month
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 11 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 3 months ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆32Sep 14, 2020Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 4 months ago
- ☆64Mar 18, 2025Updated last year
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- R package for comprehensive analysis of NULISAseq proteomic data☆10Mar 14, 2026Updated last week
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated last week
- Biological insights into the epigenetic ageing clock☆11Feb 11, 2020Updated 6 years ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 6 years ago
- A project to develop the R Shiny applications.☆12May 13, 2019Updated 6 years ago
- Materials and scripts for building cell type encyclopedia table☆20Updated this week
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Jul 7, 2022Updated 3 years ago
- sharing code for the GBD 2021 anemia paper which will be published in the Lancet Haematology INFR-15310☆12May 17, 2023Updated 2 years ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago