single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
☆21Jan 22, 2026Updated 9 months ago
Alternatives and similar repositories for dseqr
Users that are interested in dseqr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆19Aug 28, 2020Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆33Sep 14, 2020Updated 6 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Jul 31, 2026Updated 2 months ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 4 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 5 years ago
- ☆11Apr 2, 2025Updated last year
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆16May 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆33Nov 16, 2020Updated 5 years ago
- Detection of super-enhancers in cancer data☆22Apr 10, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 5 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Materials used during #NGSchool2017☆10Sep 16, 2017Updated 9 years ago
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago