Alternatives and similar repositories for tRNAscan-SE:

Users that are interested in tRNAscan-SE are comparing it to the libraries listed below

• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆40Updated last week
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆18Updated 4 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆47Updated last month
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆63Updated last week
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 8 months ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆32Updated 6 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆34Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆36Updated 6 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆61Updated 3 weeks ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆44Updated this week
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated last month
• slt666666 / NLRtracker
  NLR annotation tool
  ☆23Updated 10 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated 9 months ago
• ThomasArn / genoPlotR_wrapper
  Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…
  ☆14Updated 3 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 3 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated 10 months ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆44Updated last year
• DessimozLab / OMArk
  ☆66Updated last month
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆40Updated 4 years ago
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆38Updated 2 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆23Updated last year
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆38Updated this week
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆18Updated 4 years ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆30Updated 2 years ago
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆18Updated 2 years ago