A program for detection of tRNA genes
☆89Nov 16, 2022Updated 3 years ago
Alternatives and similar repositories for tRNAscan-SE
Users that are interested in tRNAscan-SE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- ☆31Mar 3, 2026Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- ☆41Jun 8, 2023Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆129Apr 22, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SemiBin: metagenomics binning with self-supervised deep learning☆159Apr 25, 2026Updated last week
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- ☆78Jun 2, 2023Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆301Apr 2, 2026Updated last month
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Genome annotation pre-publication results☆27Updated this week
- source code for EVM☆124Nov 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repeat-aware polishing genomes assembled using HiFi long reads☆101Apr 7, 2026Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆239Sep 18, 2025Updated 7 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆259Updated this week
- Portable solution to generate genome alignment chains using lastz☆64Apr 6, 2026Updated 3 weeks ago
- ☆39Feb 22, 2023Updated 3 years ago
- ☆12Jun 7, 2024Updated last year
- FamDB file format library and utilities☆41Aug 27, 2025Updated 8 months ago
- ☆119Oct 10, 2025Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Synteny and Rearrangement Identifier☆463Mar 17, 2026Updated last month
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 5 years ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆63Apr 17, 2026Updated 2 weeks ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆58Jul 30, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆42May 19, 2025Updated 11 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆379Feb 13, 2025Updated last year
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 3 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 6 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 9 months ago