virajbdeshpande / AmpliconArchitectLinks
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more…
☆149Updated last year
Alternatives and similar repositories for AmpliconArchitect
Users that are interested in AmpliconArchitect are comparing it to the libraries listed below
Sorting:
- ☆117Updated last year
- ☆116Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- ☆148Updated 2 months ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆164Updated 2 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 3 weeks ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated last week
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆117Updated last year
- release version☆54Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ☆75Updated 3 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆164Updated 11 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- ☆153Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆109Updated 5 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- circular RNA analysis toolset☆85Updated 11 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Annotates variants in MAF with OncoKB annotation.☆133Updated 3 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆87Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆131Updated 4 years ago