virajbdeshpande / AmpliconArchitectLinks
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more…
☆157Updated last year
Alternatives and similar repositories for AmpliconArchitect
Users that are interested in AmpliconArchitect are comparing it to the libraries listed below
Sorting:
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- ☆120Updated 2 years ago
- ☆118Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- ☆157Updated 7 months ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated 2 weeks ago
- ASCAT R package☆194Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Updated 2 months ago
- circular RNA analysis toolset☆86Updated last year
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆106Updated last month
- Fast alignment and preprocessing of chromatin profiles☆209Updated last week
- release version☆57Updated 3 years ago
- ☆157Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆152Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- ☆82Updated 9 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- ☆102Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆127Updated 2 weeks ago