☆40Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for spatialID
Users that are interested in spatialID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- domain adaptation of spatial and single-cell transcriptome☆28Sep 21, 2024Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- ☆164Mar 19, 2024Updated 2 years ago
- A toolkit of spatial transcriptomic analysis.☆293Jul 17, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆20Feb 23, 2022Updated 4 years ago
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 3 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆42Jan 30, 2024Updated 2 years ago
- ☆200Sep 18, 2024Updated 2 years ago
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆24May 16, 2025Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆462Updated this week
- Spatial transcriptome analysis in python☆25Jan 26, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- scType rewritten in python☆26Nov 7, 2024Updated last year
- ☆65Jul 23, 2024Updated 2 years ago
- ☆21Aug 17, 2026Updated last month
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆123Mar 9, 2026Updated 7 months ago
- ☆15Aug 9, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Spatiotemporal modeling of spatial transcriptomics☆344Feb 25, 2026Updated 7 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- ☆137Feb 11, 2024Updated 2 years ago
- ☆32Aug 2, 2023Updated 3 years ago
- ☆136Aug 23, 2026Updated last month
- Code repository for TCAT analyses☆16Sep 26, 2025Updated last year
- ☆13Jun 6, 2024Updated 2 years ago
- Guides and reference material for the Workflow Description Language.☆16Aug 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Mar 28, 2025Updated last year
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- ☆34Feb 25, 2025Updated last year
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- ☆48Jun 27, 2023Updated 3 years ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆44Mar 30, 2025Updated last year
- ☆43Dec 4, 2023Updated 2 years ago