Alternatives and similar repositories for spatialID

Users that are interested in spatialID are comparing it to the libraries listed below

• QuKunLab / SPACEL
  ☆59Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 2 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last week
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆13Updated 6 months ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆93Updated 3 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆52Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆37Updated 3 months ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆53Updated last year
• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆76Updated 2 years ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆129Updated last week
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 5 months ago
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆32Updated 2 years ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆132Updated 6 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆37Updated 6 months ago
• STOmics / StereoSiTE
  Spatial transcriptome analysis in python
  ☆23Updated 6 months ago
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆115Updated 3 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆32Updated 4 months ago
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆57Updated 2 months ago
• zcang / COMMOT
  ☆124Updated last year
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆63Updated last year
• YosefLab / Hotspot
  ☆123Updated 4 months ago
• ZhuangLab / SpatialBrainAgingCell22
  ☆13Updated 2 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated last year
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆65Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated 3 months ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆17Updated last year