STOmics / SAW
☆153Updated 4 months ago
Alternatives and similar repositories for SAW:
Users that are interested in SAW are comparing it to the libraries listed below
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆80Updated 4 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆193Updated 10 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆188Updated 5 months ago
- ☆104Updated 9 months ago
- Cell types enrichment analysis☆191Updated 8 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- ☆221Updated 7 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆113Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆73Updated 4 months ago
- Scissor package☆205Updated 9 months ago
- scATAC-seq data analysis tools and papers☆103Updated last year
- A toolkit of spatial transcriptomic analysis.☆216Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆118Updated 2 weeks ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆96Updated last week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆201Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆222Updated last year
- ☆253Updated 3 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- Detect doublets in single-cell RNA-seq data☆139Updated 4 years ago
- ☆85Updated last week
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆145Updated 4 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆53Updated 9 months ago
- Convert Seurat objects to 10x Genomics Loupe files.☆108Updated last week
- Clustering scRNAseq by genotypes☆175Updated 3 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 4 years ago
- ☆98Updated 4 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year