Alternatives and similar repositories for VT3D

Users that are interested in VT3D are comparing it to the libraries listed below

• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆88Updated 3 weeks ago
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆34Updated 2 years ago
• satijalab / PASTA
  ☆21Updated last year
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆88Updated last month
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆70Updated 2 months ago
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆24Updated 8 months ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆62Updated 5 months ago
• buenrostrolab / scPrinter
  ☆58Updated 2 weeks ago
• kris-nader / sc-type-py
  scType rewritten in python
  ☆24Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆128Updated 9 months ago
• YosefLab / popV
  ☆89Updated this week
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated last year
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 10 months ago
• Zhiliang-Bai / Patho-DBiT
  Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
  ☆13Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆63Updated 3 weeks ago
• ZhuangLab / SpatialBrainAgingCell22
  ☆14Updated 3 years ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆55Updated 7 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆85Updated 10 months ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆100Updated 3 years ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆118Updated 3 months ago
• ShobiStassen / VIA
  trajectory inference
  ☆105Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆23Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 4 months ago
• rajewsky-lab / spacemake
  ☆49Updated last week
• MingyuYang-Yale / DBiT-seq
  ☆25Updated 11 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Updated 6 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆79Updated last week
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• felixhorns / FlyPN
  Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)
  ☆21Updated 8 years ago