Alternatives and similar repositories for STdeconv_benchmark

Users that are interested in STdeconv_benchmark are comparing it to the libraries listed below

• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆39Updated 8 months ago
• Banovich-Lab / Spatial_PF
  ☆31Updated 2 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆91Updated 9 months ago
• LiHongCSBLab / SOAPy
  ☆31Updated 7 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• TencentAILabHealthcare / spatialID
  ☆40Updated 2 years ago
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆12Updated 11 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 11 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆30Updated 2 months ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆39Updated 9 months ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆56Updated 4 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• Teichlab / HCA_Heart_ver2
  ☆39Updated 2 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆59Updated last month
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆56Updated 5 months ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆54Updated 4 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 5 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 11 months ago
• yunguan-wang / Spacia
  ☆30Updated 5 months ago
• dpeerlab / ENVI
  ☆50Updated 4 months ago
• snehamitra / SCARlink
  ☆59Updated 3 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• bowang-lab / DeepVelo
  ☆46Updated last year
• PansccSpat / SpatialMapESCC
  ☆22Updated 11 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 4 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• Winnie09 / Lamian
  ☆57Updated last month