The benchmarking of spatial transcriptomics deconvolution methods
☆34Feb 24, 2023Updated 3 years ago
Alternatives and similar repositories for STdeconv_benchmark
Users that are interested in STdeconv_benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jun 29, 2022Updated 3 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- ☆40Nov 17, 2022Updated 3 years ago
- ☆12Aug 16, 2022Updated 3 years ago
- ☆11Jun 25, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- ☆131Jun 10, 2022Updated 4 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 2 months ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 5 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆96Mar 26, 2026Updated 2 months ago
- ☆132Feb 11, 2024Updated 2 years ago
- ☆23Mar 22, 2023Updated 3 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14Updated this week
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago
- ☆19Feb 23, 2022Updated 4 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated 3 months ago
- ☆12Jun 11, 2023Updated 3 years ago
- TLS in HNSCC☆17Apr 5, 2026Updated 2 months ago
- ☆47Jan 28, 2026Updated 4 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆100Apr 25, 2026Updated last month
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆10Jan 9, 2025Updated last year
- ☆14Jan 24, 2024Updated 2 years ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆13Mar 11, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆53Apr 1, 2021Updated 5 years ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 3 years ago
- ☆43Jan 12, 2026Updated 5 months ago
- ☆14Feb 12, 2026Updated 4 months ago
- ☆21Jul 30, 2024Updated last year