Alternatives and similar repositories for STdeconv_benchmark

Users that are interested in STdeconv_benchmark are comparing it to the libraries listed below

• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆35Updated 5 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆53Updated last month
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆25Updated 10 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• LiHongCSBLab / SOAPy
  ☆31Updated 4 months ago
• madilabcode / scNET
  ☆45Updated last week
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆12Updated 8 months ago
• schwartzlab-methods / CellNEST
  Implementation of CellNEST method
  ☆36Updated last week
• Banovich-Lab / Spatial_PF
  ☆28Updated 4 months ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆50Updated last month
• bowang-lab / DeepVelo
  ☆47Updated last year
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆51Updated last month
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated 9 months ago
• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆60Updated last year
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆26Updated last year
• TencentAILabHealthcare / spatialID
  ☆39Updated 2 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated this week
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆51Updated last year
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 2 months ago
• dpeerlab / ENVI
  ☆48Updated last month
• QuKunLab / SPACEL
  ☆59Updated 11 months ago