Boyle-Lab / Blacklist
Application for making ENCODE Blacklists
☆296Updated 3 years ago
Alternatives and similar repositories for Blacklist:
Users that are interested in Blacklist are comparing it to the libraries listed below
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆210Updated 2 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆200Updated last month
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- RNA-seq workflow using STAR and DESeq2☆338Updated 8 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆246Updated 2 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆209Updated this week
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Download FASTQ files from SRA or ENA repositories.☆319Updated 3 weeks ago
- ☆249Updated 4 months ago
- Detecting sites of genomic enrichment☆189Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆400Updated last year
- ☆148Updated 2 years ago
- Intro to ChIPseq using HPC☆302Updated 2 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆188Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- GTEx & TOPMed data production and analysis pipelines☆360Updated 2 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆244Updated 4 months ago
- parallel fastq-dump wrapper☆290Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆217Updated 2 weeks ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆220Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 9 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- ☆131Updated 6 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆251Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆274Updated 9 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆211Updated last month
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆213Updated 10 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 7 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated 2 weeks ago