Boyle-Lab / BlacklistLinks
Application for making ENCODE Blacklists
☆332Updated 4 years ago
Alternatives and similar repositories for Blacklist
Users that are interested in Blacklist are comparing it to the libraries listed below
Sorting:
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- ☆289Updated 3 months ago
- Intro to ChIPseq using HPC☆320Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated 2 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Updated last year
- ENCODE ChIP-seq pipeline☆278Updated last year
- GTEx & TOPMed data production and analysis pipelines☆394Updated 4 months ago
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- parallel fastq-dump wrapper☆303Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆351Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 3 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆201Updated this week
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆230Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Updated 3 months ago
- ☆145Updated 7 years ago
- STAR-Fusion codebase☆248Updated 4 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆429Updated last year
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆409Updated 6 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated last week
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆245Updated 3 years ago
- TCR and BCR assembly from RNA-seq data☆338Updated 2 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆229Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆491Updated 8 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆187Updated last week