agitter / single-cell-pseudotimeLinks
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
☆427Updated last month
Alternatives and similar repositories for single-cell-pseudotime
Users that are interested in single-cell-pseudotime are comparing it to the libraries listed below
Sorting:
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- ☆357Updated 3 years ago
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆551Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆433Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- ☆391Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆327Updated this week
- ☆290Updated 3 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆482Updated 3 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆522Updated 3 weeks ago
- A list of scRNA-seq analysis tools☆712Updated last week
- tools and notes for spatial omics☆307Updated 4 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆498Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆460Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- This is the alpha version of the CellOracle package☆366Updated 6 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆580Updated 8 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆364Updated 9 months ago
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- Inferring CNV from Single-Cell RNA-Seq☆625Updated 5 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆471Updated last month
- Comparison of methods for trajectory inference on single-cell data 🥇☆208Updated last year
- 10x Genomics Single Cell Analysis☆424Updated 5 months ago
- Community-provided extensions to Seurat☆340Updated 7 months ago
- CellRank: dynamics from multi-view single-cell data☆390Updated 3 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago