Alternatives and similar repositories for iMAP:

Users that are interested in iMAP are comparing it to the libraries listed below

• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆60Updated 3 years ago
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆29Updated 4 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 2 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆50Updated 6 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆41Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆68Updated 3 weeks ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated 10 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆43Updated last month
• JinmiaoChenLab / ezSingleCell2
  ☆53Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆42Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆49Updated 3 weeks ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated last month
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆29Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated 2 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated this week
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆41Updated last year
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆23Updated 3 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 3 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• liulab-dfci / lisa2
  ☆29Updated 2 years ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆71Updated 3 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆39Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆47Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 9 months ago