Svvord / iMAP
A novel unsupervised batch removal framework, called iMAP, based on neural networks.
☆35Updated 3 years ago
Alternatives and similar repositories for iMAP:
Users that are interested in iMAP are comparing it to the libraries listed below
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- ☆40Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- ☆59Updated 5 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- scWGCNA☆58Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- ☆46Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆69Updated 2 years ago
- This is the official repository for the Human Cell Atlas Heart project.☆29Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Single cell omics biology annotations☆50Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Gene expression deconvolution using dampened weighted least squares☆25Updated 4 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆97Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 3 weeks ago
- ☆60Updated 4 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago