Svvord / iMAPLinks
A novel unsupervised batch removal framework, called iMAP, based on neural networks.
☆35Updated 3 years ago
Alternatives and similar repositories for iMAP
Users that are interested in iMAP are comparing it to the libraries listed below
Sorting:
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- ☆63Updated 4 years ago
- ☆62Updated 6 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆67Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- ☆41Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Accurate and fast cell marker gene identification with COSG☆47Updated 5 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆108Updated 3 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- ☆20Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated last month
- Tumor Immune Single-cell Hub☆21Updated 5 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- ☆32Updated 3 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- R package for semi-supervised single-cell data integration☆87Updated last week