A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.
☆17Apr 26, 2021Updated 4 years ago
Alternatives and similar repositories for smartseq2
Users that are interested in smartseq2 are comparing it to the libraries listed below
Sorting:
- ☆11Nov 7, 2022Updated 3 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 2 months ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Jan 12, 2022Updated 4 years ago
- ☆19Aug 20, 2024Updated last year
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 4 months ago
- ☆120Sep 5, 2023Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year
- Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)☆24Mar 4, 2021Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 6 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Mar 2, 2020Updated 5 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- A R package for advanced single cell data viz☆73Aug 29, 2025Updated 6 months ago
- ☆29Nov 15, 2023Updated 2 years ago
- Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and C…☆11Updated this week
- DEAPP shiny App☆30Jun 8, 2022Updated 3 years ago
- Python SDK and examples for the RSpace API☆17Oct 29, 2025Updated 4 months ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 6 years ago
- ☆14Mar 22, 2018Updated 7 years ago
- Neuroimaging in R Talk☆10Apr 9, 2016Updated 9 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- A listing of the commands, protocols and other notes that I take on a daily basis☆11Oct 25, 2023Updated 2 years ago
- Detection of pathological colorectal cancer based on deep learning☆12Jan 29, 2021Updated 5 years ago
- Drop-in replacement controller for Kinesis Contoured keyboards☆12Dec 19, 2023Updated 2 years ago
- 淘宝万能抢单，有exe，有python源码，有讲解☆10Oct 23, 2020Updated 5 years ago
- Metagenome sequencing pipeline 宏基因组分析流程☆11Aug 29, 2022Updated 3 years ago
- Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-re…☆11Nov 16, 2025Updated 3 months ago
- Automatically perform exploratory data analysis, and generate a report in Word '.docx' format.☆10Feb 11, 2026Updated 2 weeks ago
- ☆14Oct 14, 2022Updated 3 years ago
- ☆12Feb 15, 2023Updated 3 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 2 years ago
- parallel-fastq-dump implementation in bash script☆41Nov 28, 2019Updated 6 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated last week
- Course Website☆320Updated this week
- Even yet another iambic electronic keyer☆10Feb 6, 2022Updated 4 years ago
- Upgrade to coloc☆13Aug 1, 2018Updated 7 years ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 2 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design☆13Feb 28, 2023Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago