Pengeace / RPITERLinks
A hierarchical deep learning framework for ncRNA-protein interaction prediction.
☆14Updated 2 years ago
Alternatives and similar repositories for RPITER
Users that are interested in RPITER are comparing it to the libraries listed below
Sorting:
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- ☆21Updated 2 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Updated 3 years ago
- ☆18Updated 11 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 6 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Scripts for building computational models of gene regulation with tensorflow☆10Updated 5 years ago
- A method to predict DNA shape features considering farther flanking region.☆32Updated 9 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- DeepECtransformer☆26Updated last year
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- ☆18Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆11Updated last month
- Signaling Pathway Visualizer☆9Updated 6 years ago
- ☆38Updated last year
- Peptide library design☆23Updated 4 years ago
- Graph-based representation learning method for protein function prediction☆24Updated 4 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- Predicting ncRNA-protein interaction using high-level features based on deep learning☆15Updated 5 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆20Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago