hanasusak / cDriverLinks
cDriver R package for finding candidate driver genes in cancers
☆18Updated 7 years ago
Alternatives and similar repositories for cDriver
Users that are interested in cDriver are comparing it to the libraries listed below
Sorting:
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆31Updated 3 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- DriverPower☆26Updated 6 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 2 weeks ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- Easy Copy Number !☆21Updated 3 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Utility functions for FACETS☆38Updated last year
- ☆16Updated 2 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ☆40Updated 7 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 2 months ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 7 months ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago