Alternatives and similar repositories for QLattice-clinical-omics

Users that are interested in QLattice-clinical-omics are comparing it to the libraries listed below

• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 3 years ago
• TranslationalBioinformaticsUnit / TransformersInGenomicsPapers
  A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and …
  ☆38Updated last year
• bsml320 / VAEN
  A deep generative neural network based approach to impute drug response
  ☆23Updated 4 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆16Updated 4 years ago
• melobio / Concerto-reproducibility
  ☆40Updated 3 years ago
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• rvinas / HYFA
  Hypergraph Factorisation
  ☆26Updated last year
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated last year
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆24Updated 4 months ago
• TencentAILabHealthcare / DeepAIR
  ☆37Updated 2 years ago
• FakeEnd / iDNA_ABF
  python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…
  ☆15Updated last year
• altoslabs / perturbench
  ☆69Updated 2 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆96Updated 10 months ago
• albert-ying / MethylGPT
  This is the official codebase for methylGPT : a foundation model for the DNA methylome.
  ☆50Updated 4 months ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆47Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated 3 weeks ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• YeoLab / HydRA
  ☆12Updated 10 months ago
• causalbench / causalbench
  ☆56Updated 6 months ago
• HantaoShu / DeepSEM
  ☆87Updated 2 years ago
• fratajcz / speos
  A positive-unlabeled ensemble learning framework for disease gene prioritization.
  ☆20Updated last month
• biagent-dev / bia
  BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
  ☆39Updated last year
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆24Updated 5 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆12Updated 2 years ago
• LiuLab-Bioelectronics-Harvard / UnitedNet
  ☆49Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆65Updated 8 months ago
• schulter / EMOGI
  An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
  ☆160Updated 3 years ago