JinmiaoChenLab / Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
☆71Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Batch-effect-removal-benchmarking
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- Single-cell disease relevance score (scDRS)☆114Updated last month
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆102Updated last year
- ☆55Updated 4 years ago
- ☆79Updated last week
- ☆108Updated 2 years ago
- ☆47Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆89Updated 11 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆96Updated 3 weeks ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆121Updated last year
- A package for automated processing of single cell RNA-seq data in cancer☆99Updated last month
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- Assessing the purity of single cell population☆109Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆148Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆150Updated last year
- ☆126Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆101Updated 2 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- A tool for semi-automatic cell type harmonization and integration☆94Updated 10 months ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- ☆58Updated 5 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆135Updated 7 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆85Updated 3 years ago