ciccalab / SIMPLILinks
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
☆38Updated last week
Alternatives and similar repositories for SIMPLI
Users that are interested in SIMPLI are comparing it to the libraries listed below
Sorting:
- A toolkit for processing multiplexed tissue images☆64Updated 2 weeks ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆85Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆62Updated 4 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- ☆72Updated this week
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- ☆28Updated last year
- R package for visualization of highly multiplexed imaging data☆33Updated 4 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- ☆13Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- A pipeline to transform images into valuable analysis items☆15Updated 3 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 4 years ago
- Python package for reading imaging mass cytometry (IMC) files☆16Updated last week
- ☆59Updated last week
- ☆27Updated 11 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- Multiple-choice microscopy pipeline☆135Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆35Updated last week
- MERFISH decoding software☆26Updated last month
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- Framework for image and flow cytometry analysis☆29Updated 2 months ago
- ☆39Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆29Updated last year