Sample representation benchmark for single-cell data
☆13May 19, 2026Updated last week
Alternatives and similar repositories for SPARE
Users that are interested in SPARE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35May 20, 2026Updated last week
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆55May 20, 2026Updated last week
- ☆35May 1, 2026Updated 3 weeks ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated 10 months ago
- CUDA implementation of RTXX algorithm for multiplication of matrix and its transpose X^T X☆19Jun 9, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12May 29, 2024Updated last year
- ☆85Feb 17, 2026Updated 3 months ago
- Multi-origin batch effect remover method☆20Jan 31, 2023Updated 3 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated 10 months ago
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated 11 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- A federated implementation of PyDESeq2, based on Substra.☆17May 18, 2026Updated last week
- Cookiecutter template for scverse☆90Updated this week
- Package for the analysis of Transcripts outside segmented cells in ST data☆29May 18, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Visualising data frames as funky heatmaps 📊☆199Dec 12, 2025Updated 5 months ago
- Single-cell perturbation analysis☆317Updated this week
- "NA Figure": visualization of the missing data distribution☆15Sep 1, 2023Updated 2 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 7 months ago
- Simple scVI implementation☆13May 18, 2026Updated last week
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆23Jul 10, 2024Updated last year
- Calling disease-related genes☆16Apr 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- d3heatmap is a Python package to create interactive heatmaps based on d3js.☆11Sep 14, 2023Updated 2 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- ☆31Apr 9, 2022Updated 4 years ago
- ☆23Jun 14, 2025Updated 11 months ago
- ☆13Jun 26, 2025Updated 11 months ago
- 1st place solution of Kaggle Open Problems - Multimodal Single-Cell Integration☆43Mar 9, 2023Updated 3 years ago
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆22Dec 2, 2025Updated 5 months ago
- Automated Quantitative Trait Locus Analysis (AutoQTL)☆11Mar 5, 2024Updated 2 years ago
- Fast streams for block gzip files.☆14Nov 11, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19May 19, 2026Updated last week
- ☆12May 16, 2023Updated 3 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆48Dec 16, 2024Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 10 months ago
- ☆41Jan 19, 2026Updated 4 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆77Nov 11, 2025Updated 6 months ago
- ☆15Jun 27, 2025Updated 11 months ago