CAG-CNV / ParseCNV2View external linksLinks
Parse Copy Number Variation from Array and Sequencing
☆17Dec 1, 2023Updated 2 years ago
Alternatives and similar repositories for ParseCNV2
Users that are interested in ParseCNV2 are comparing it to the libraries listed below
Sorting:
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Jan 12, 2024Updated 2 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Mar 26, 2024Updated last year
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 3 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- ☆17Oct 21, 2024Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Mar 23, 2025Updated 10 months ago
- ☆19Nov 22, 2022Updated 3 years ago
- ☆21Aug 11, 2021Updated 4 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- A framework for network analysis and display of SNPs☆19Oct 31, 2016Updated 9 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Dec 10, 2024Updated last year
- A Rare Variant Caller for Array-based Genotyping☆25Feb 25, 2015Updated 10 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Copy number vaiation detection from SNP arrays☆97May 19, 2024Updated last year
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 2 months ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- ☆26Jan 26, 2026Updated 3 weeks ago
- Links for Ecology and Evolution☆23Jul 15, 2019Updated 6 years ago
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- Toolkit for genome-wide analysis of tandem repeats☆59Nov 7, 2025Updated 3 months ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 7 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated 11 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Jan 21, 2024Updated 2 years ago
- Sorting Intolerant From Tolerant For Genomes☆31Nov 3, 2017Updated 8 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 6 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- ☆31Jan 29, 2026Updated 2 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Nov 21, 2019Updated 6 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Aug 28, 2020Updated 5 years ago