a1ultima / hpcleap_dndsLinks
Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.
☆19Updated last year
Alternatives and similar repositories for hpcleap_dnds
Users that are interested in hpcleap_dnds are comparing it to the libraries listed below
Sorting:
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- ☆25Updated 9 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- orthology assignment using phylogenetic and network analyses☆54Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- ☆35Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Updated 7 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Updated last year
- Visualising discordant reads☆15Updated 10 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- Yet another Hi-C scaffolding tool☆22Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Updated 8 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago