a1ultima / hpcleap_dndsView external linksLinks
Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.
☆19Dec 10, 2024Updated last year
Alternatives and similar repositories for hpcleap_dnds
Users that are interested in hpcleap_dnds are comparing it to the libraries listed below
Sorting:
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 7 years ago
- ☆11Apr 21, 2023Updated 2 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- phylogenetic comparative method☆11Jan 9, 2026Updated last month
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Mar 26, 2024Updated last year
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 3 months ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 6 years ago
- Parse Copy Number Variation from Array and Sequencing☆17Dec 1, 2023Updated 2 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 3 years ago
- ☆14Feb 22, 2022Updated 3 years ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 7 years ago
- Fragmentase Artifact Detection and Elimination☆12Mar 22, 2022Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 2 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 6 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Jan 4, 2025Updated last year
- ☆17Oct 21, 2024Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆41Dec 18, 2025Updated last month
- ☆16Jan 15, 2025Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 3 weeks ago
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Mar 23, 2025Updated 10 months ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 9 months ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- Course repository for Methods in Biodiversity Analysis☆23Jun 6, 2025Updated 8 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Jun 14, 2023Updated 2 years ago