Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.
☆20Dec 10, 2024Updated last year
Alternatives and similar repositories for hpcleap_dnds
Users that are interested in hpcleap_dnds are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- phylogenetic comparative method☆11Jan 9, 2026Updated 8 months ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 8 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 8 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆37Mar 27, 2019Updated 7 years ago
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 6 years ago
- HyPhy: Hypothesis testing using Phylogenies☆271Updated this week
- ☆12Apr 21, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆14Mar 6, 2023Updated 3 years ago
- A program for multimodel inference on speciation and trait evolution☆36Sep 4, 2017Updated 9 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Sep 21, 2026Updated last week
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆16Apr 15, 2026Updated 5 months ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 10 months ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 10 months ago
- Parse Copy Number Variation from Array and Sequencing☆19Dec 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- use paired-end transcriptome reads to scaffold genomes☆12May 30, 2019Updated 7 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Synteny Mapping and Analysis Program☆30Aug 27, 2026Updated last month
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Learning Machine Learning with TensorFlow☆10Feb 20, 2017Updated 9 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- Visualization of the pan-genome output by panX☆69Jun 16, 2025Updated last year
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated 2 months ago
- A set of Deep Reinforcement Learning Agents implemented in Tensorflow.☆13Feb 5, 2017Updated 9 years ago
- ☆11Dec 12, 2014Updated 11 years ago
- High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads☆16Apr 10, 2026Updated 5 months ago