BEER: Batch EffEct Remover for single-cell data
☆26Jan 9, 2025Updated last year
Alternatives and similar repositories for BEER
Users that are interested in BEER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…☆15Mar 30, 2016Updated 10 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 7 months ago
- ☆10Nov 5, 2023Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code related to scRNA analysis using the scAmpi workflow☆26Jun 24, 2026Updated 2 months ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- SNP-free RNA editing Identification Toolkit☆50Jan 7, 2025Updated last year
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆179Jan 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Clone of the Bioconductor repository for the batchelor package.☆19Apr 9, 2026Updated 4 months ago
- ☆32Dec 29, 2023Updated 2 years ago
- dalmatian is a collection of high-level companion functions for Firecloud and FISS.☆20Aug 24, 2026Updated last week
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 2 months ago
- Biostatistics 6301: Introduction to Statistical Computing☆14Aug 15, 2024Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆78Jan 24, 2022Updated 4 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Jan 3, 2020Updated 6 years ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated last week
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Jun 28, 2021Updated 5 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- ☆17Jun 5, 2019Updated 7 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- Accurate and fast cell marker gene identification with COSG☆66Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated last month
- TMARKER is a software for cancer cell nucleus detection, segmentation, counting, and classification.☆14Feb 22, 2017Updated 9 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 3 months ago
- ☆46Aug 13, 2024Updated 2 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 11 months ago