KlugerLab / deepcytof
β18Updated 8 years ago
Alternatives and similar repositories for deepcytof:
Users that are interested in deepcytof are comparing it to the libraries listed below
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β52Updated 9 months ago
- Bootstrap imputation for scRNAseq dataβ12Updated 4 years ago
- R package for differential discovery analyses in high-dimensional cytometry dataβ20Updated last month
- β19Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:β34Updated last year
- Representation Learning for detection of phenotype-associated cell subsetsβ65Updated 4 years ago
- Using self-organizing maps for visualization and interpretation of cytometry dataβ62Updated last year
- Single-cell exploratory data analysis for RNA-Seqβ40Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional dataβ52Updated 5 months ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry dataβ45Updated 8 years ago
- β12Updated last year
- scRNAseq integration with triplet neural networksβ40Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen β¦β40Updated 2 years ago
- MultiMAP for integration of single cell multi-omicsβ55Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seqβ22Updated 2 years ago
- Single-cell Hierarchical Poisson Factorizationβ68Updated 2 years ago
- Multi-omics studies are available hereβ51Updated 2 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4β¦β20Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlationβ15Updated last year
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysisβ19Updated 5 years ago
- Analyzing cellular niches in spatial transcriptomics dataβ29Updated 4 months ago
- Spatial analysis toolkit for single cell multiplexed tissue dataβ30Updated 6 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batchβ¦β37Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression dataβ22Updated 3 years ago
- β24Updated 5 years ago
- Comparison of single cell normalization strategiesβ10Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq dataβ17Updated 3 years ago
- β21Updated 6 years ago
- β20Updated 3 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoringβ18Updated 11 months ago