KlugerLab / deepcytofLinks
☆18Updated 8 years ago
Alternatives and similar repositories for deepcytof
Users that are interested in deepcytof are comparing it to the libraries listed below
Sorting:
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆54Updated 10 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆21Updated 6 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 3 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- Single-cell multi-omics integration using Optimal Transport☆46Updated 11 months ago
- ☆19Updated 4 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆72Updated 3 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆20Updated 6 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 11 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 3 weeks ago
- ☆12Updated last year
- Software for processing and analyzing STARmap experiments.☆38Updated 5 years ago
- ☆20Updated 4 years ago
- Code and documentation for the curation of cellxgene datasets☆47Updated this week