KlugerLab / deepcytofLinks
☆18Updated 8 years ago
Alternatives and similar repositories for deepcytof
Users that are interested in deepcytof are comparing it to the libraries listed below
Sorting:
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 3 weeks ago
- ☆19Updated 4 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆57Updated last year
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆73Updated 5 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated 2 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- ☆102Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- ☆21Updated 7 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 6 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Code for the paper on t-SNE with variable degree of freedom☆25Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆27Updated 6 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated 2 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆21Updated 11 months ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- ☆25Updated 9 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 3 months ago