cjw85 / fastxLinks
Just a python fasta/q parser based on kseq.h
☆14Updated 5 years ago
Alternatives and similar repositories for fastx
Users that are interested in fastx are comparing it to the libraries listed below
Sorting:
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- ☆28Updated 10 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 6 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Benchmark structural variant calls against a reference set☆18Updated 2 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 6 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- ☆15Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆24Updated 5 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- ☆33Updated 3 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Updated 5 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago