cjw85 / fastxLinks
Just a python fasta/q parser based on kseq.h
☆12Updated 5 years ago
Alternatives and similar repositories for fastx
Users that are interested in fastx are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- ☆32Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last year
- ☆28Updated 3 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- ☆25Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- ☆14Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Integrated Variant Caller☆17Updated 7 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year