afrendeiro / toolkitLinks
A toolkit for NGS analysis with Python
☆14Updated 2 years ago
Alternatives and similar repositories for toolkit
Users that are interested in toolkit are comparing it to the libraries listed below
Sorting:
- Single-cell copy number calling and event history reconstruction.☆27Updated 9 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated this week
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆39Updated 5 years ago
- ☆17Updated last year
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆58Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Tools which deal with multiple single cell measurements☆24Updated last month
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Cooler demo using a Jupyter notebook Binder☆18Updated 5 years ago
- ☆39Updated 3 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 6 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Scripts for using scanpy☆38Updated 6 months ago
- chia pet analysis software☆25Updated 6 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 weeks ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri …☆65Updated this week
- ☆37Updated 6 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- ☆22Updated 5 years ago