afrendeiro / toolkitLinks
A toolkit for NGS analysis with Python
☆14Updated 2 years ago
Alternatives and similar repositories for toolkit
Users that are interested in toolkit are comparing it to the libraries listed below
Sorting:
- Scripts for using scanpy☆37Updated 5 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ☆34Updated 6 years ago
- ☆22Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- ☆59Updated last year
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 9 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Single-cell copy number calling and event history reconstruction.☆27Updated 8 months ago
- RAGE-seq scripts☆18Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆33Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- ☆17Updated last year