afrendeiro / toolkit
A toolkit for NGS analysis with Python
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for toolkit
- ☆18Updated last year
- ☆34Updated 6 months ago
- Single-cell copy number calling and event history reconstruction.☆20Updated 3 months ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated last week
- ☆33Updated 5 years ago
- Cellular Genetics Informatics Notebooks☆21Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- ☆29Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆17Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆22Updated 2 years ago
- chia pet analysis software☆25Updated 5 years ago
- IDR☆30Updated last year
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆20Updated 5 years ago
- Mapping pipeline for snmC-seq based technologies.☆16Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- ☆20Updated last year
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 2 years ago
- Transcription Factor Enrichment Analysis☆34Updated 7 months ago
- ☆29Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week