Alternatives and similar repositories for KMDHierarchicalClustering

Users that are interested in KMDHierarchicalClustering are comparing it to the libraries listed below

• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• limfuxing / ruvIIInb
  This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…
  ☆18Updated 11 months ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 4 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• SimoneTiberi / distinct
  distinct: a method for differential analyses via hierarchical permutation tests
  ☆11Updated last year
• lambdamoses / novoSpaRc
  Reconstruction of spatial context of gene expression with optimal transport
  ☆11Updated 6 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated last month
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 6 years ago
• cz-ye / DECENT
  Differential Expression with Capture Efficiency adjustmeNT
  ☆14Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆38Updated 2 years ago
• fmicompbio / eisaR
  Exon-Intron Split Analysis (EISA) in R
  ☆16Updated last month
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• Novartis / granulator
  ☆11Updated 3 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 3 months ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆24Updated 5 years ago
• BIMIB-DISCo / LACE
  LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…
  ☆15Updated last month
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• phillipnicol / scGBM
  Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models
  ☆12Updated 2 months ago