Alternatives and similar repositories for DeepLearningCyTOF

Users that are interested in DeepLearningCyTOF are comparing it to the libraries listed below

• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆42Updated 10 months ago
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆160Updated last month
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated last year
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆217Updated last year
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆70Updated 2 weeks ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆123Updated 7 months ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆139Updated 2 years ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆146Updated 3 weeks ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆76Updated 2 years ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆65Updated last week
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆107Updated 2 years ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆67Updated 2 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆87Updated 5 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆109Updated 3 weeks ago
• AllonKleinLab / SPRING_dev
  ☆71Updated last year
• JhuangLab / CytoTree
  A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
  ☆28Updated 5 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆154Updated last year
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆205Updated last year
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• miaozhun / DEsingle
  Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.
  ☆31Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆140Updated last year
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 10 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 4 years ago
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆114Updated last year
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆209Updated 2 years ago