raphael-group / AncesTreeLinks
An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data
☆14Updated 7 years ago
Alternatives and similar repositories for AncesTree
Users that are interested in AncesTree are comparing it to the libraries listed below
Sorting:
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- ☆36Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆14Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆12Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆43Updated 9 years ago
- ☆12Updated 3 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆22Updated 3 weeks ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago