raphael-group / AncesTreeLinks
An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data
☆14Updated 7 years ago
Alternatives and similar repositories for AncesTree
Users that are interested in AncesTree are comparing it to the libraries listed below
Sorting:
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆43Updated 9 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ☆36Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- ☆12Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ☆14Updated 2 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- ☆12Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- R tools to interact with hap.py output☆16Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆13Updated 8 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- ☆11Updated 7 years ago