biobakery / graphlan
High-quality circular representations of taxonomic and phylogenetic trees
☆92Updated 5 months ago
Alternatives and similar repositories for graphlan:
Users that are interested in graphlan are comparing it to the libraries listed below
- Pipeline for metabolic annotation of microbial genomes☆142Updated 7 months ago
- Similarity networks of biosynthetic gene clusters☆94Updated this week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆106Updated last week
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- Bioinformatics program inStrain☆157Updated 8 months ago
- DAS Tool☆143Updated 8 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆132Updated last month
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆149Updated this week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated 3 weeks ago
- CLI tool to annotate genes with KOfam☆73Updated last year
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆180Updated 6 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- MGnify genome analysis pipeline☆104Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆128Updated this week
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆81Updated 6 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆180Updated 6 months ago
- Pan-genome wide association studies☆176Updated 8 months ago
- A user-friendly workflow for phylogenomics☆204Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆274Updated last month
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆113Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆205Updated 3 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- Open-source usearch☆107Updated 7 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆155Updated this week
- Metagenomic classification of long-read sequencing data☆72Updated last week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆77Updated 2 months ago
- An updated pipeline for pangenome investigation☆275Updated 3 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆181Updated last month