Alternatives and similar repositories for graphlan

Users that are interested in graphlan are comparing it to the libraries listed below

• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆155Updated 8 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 9 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆181Updated 8 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆149Updated last week
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆159Updated 7 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆78Updated 2 years ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆108Updated last week
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆166Updated last month
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆201Updated 4 months ago
• rcedgar / usearch12
  Open-source usearch
  ☆128Updated 5 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆157Updated 2 months ago
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆145Updated last month
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆159Updated 2 weeks ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆87Updated 2 years ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆132Updated last year
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆92Updated 5 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆225Updated last month
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 7 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆114Updated last week
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆130Updated this week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆143Updated 2 years ago
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆221Updated last month
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆80Updated 2 years ago
• cmks / DAS_Tool
  DAS Tool
  ☆166Updated last year
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆201Updated this week
• dcouvin / CRISPRCasFinder
  A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
  ☆100Updated 2 years ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated 3 weeks ago
• phac-nml / staramr
  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
  ☆182Updated 3 months ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆90Updated this week