Alternatives and similar repositories for graphlan

Users that are interested in graphlan are comparing it to the libraries listed below

• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆117Updated last week
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆149Updated 3 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆147Updated last week
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆116Updated 3 weeks ago
• rcedgar / usearch12
  Open-source usearch
  ☆112Updated last year
• phac-nml / staramr
  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
  ☆161Updated 6 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆173Updated last month
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated 2 years ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆197Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆116Updated 3 months ago
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆82Updated 7 years ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆190Updated 11 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆85Updated last month
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆162Updated 2 weeks ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆117Updated 6 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆150Updated last year
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆137Updated last week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆139Updated last year
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆214Updated 3 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆213Updated 2 weeks ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆201Updated 11 months ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆299Updated 2 weeks ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆167Updated last year
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆60Updated 2 weeks ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated this week
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆136Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆242Updated last year
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆148Updated last week