biobakery / graphlanLinks
High-quality circular representations of taxonomic and phylogenetic trees
☆106Updated last year
Alternatives and similar repositories for graphlan
Users that are interested in graphlan are comparing it to the libraries listed below
Sorting:
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆158Updated 9 months ago
- Similarity networks of biosynthetic gene clusters☆150Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- MGnify genome analysis pipeline☆108Updated 3 weeks ago
- Bioinformatics program inStrain☆181Updated 8 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated last month
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆204Updated last week
- Download files from NCBI Entrez by accession☆134Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆202Updated 5 months ago
- Find clustered hits from a BLAST search☆132Updated 3 weeks ago
- Open-source usearch☆128Updated 5 months ago
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆159Updated 2 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆162Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 8 months ago
- A user-friendly workflow for phylogenomics☆225Updated this week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆183Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆221Updated this week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆208Updated last week
- SMETANA: a tool to analyse interactions in microbial communities☆66Updated 9 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆100Updated 2 years ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆95Updated 5 months ago
- Python package to study microbial communities using metabolic modeling.☆115Updated 2 weeks ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆142Updated last month