twbattaglia / koekenLinks
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
β26Updated 8 years ago
Alternatives and similar repositories for koeken
Users that are interested in koeken are comparing it to the libraries listed below
Sorting:
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated last year
- A microbial profiling framework for metagenomic analysisβ24Updated 5 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Labβ11Updated 7 years ago
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq dataβ16Updated last year
- A shiny package for microbiome functional enrichment analysisβ37Updated 2 months ago
- β23Updated 6 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast resultβ31Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- Visualization tool for genetic reassortmentβ21Updated 2 months ago
- repo for cicese metatranscriptomics workshop, nov 2018β14Updated 5 years ago
- A reference viral database (RVDB)β26Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profilesβ37Updated last year
- Advanced metagenomic Sequence Analysis in Rβ15Updated 6 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)β18Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM fileβ24Updated 3 years ago
- Maximum Likelihood Amplicon Pipelineβ22Updated last year
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpuβ¦β22Updated 7 years ago
- Using kallisto for metagenomic analysisβ50Updated 8 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encodingβ23Updated last year
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic dataβ17Updated last year
- KOBAS: a command line tool for identifying significant pathways from genomic dataβ30Updated 15 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBIβ29Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalogβ20Updated 3 years ago
- Merge transcriptome assembliesβ31Updated 8 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing dataβ14Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.β27Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ32Updated 4 years ago
- β18Updated 6 years ago