twbattaglia / koekenLinks
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
☆26Updated 8 years ago
Alternatives and similar repositories for koeken
Users that are interested in koeken are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- ggtree version of plotTree.R☆18Updated 7 years ago
- Visualization tool for genetic reassortment☆21Updated 2 months ago
- ☆42Updated 8 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 3 weeks ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated 2 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- A reference viral database (RVDB)☆26Updated 7 years ago
- ☆19Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 6 years ago
- ☆24Updated 5 years ago
- ☆35Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 3 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- ☆23Updated 7 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago