twbattaglia / koekenLinks
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
β26Updated 8 years ago
Alternatives and similar repositories for koeken
Users that are interested in koeken are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 7 years ago
- A microbial profiling framework for metagenomic analysisβ24Updated 5 years ago
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- Visualization tool for genetic reassortmentβ21Updated last month
- A shiny package for microbiome functional enrichment analysisβ38Updated last week
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β24Updated last year
- Ying's tools for analysis, with particular focus on microbiome dataβ41Updated 3 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Updated 5 years ago
- Pipeline to run qiime2 with snakemakeβ16Updated 5 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencingβ11Updated last month
- β41Updated 8 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β33Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq dataβ17Updated 5 months ago
- tidyMicro GitHup Repositoryβ21Updated 4 years ago
- A set of R scripts for the analysis of microbial profilesβ41Updated last year
- R shiny app for interactive microbiome analysisβ56Updated 6 months ago
- Visualize microbiome data with black magic ggtreeβ68Updated 5 years ago
- Advanced metagenomic Sequence Analysis in Rβ15Updated 7 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16sβ59Updated 2 years ago
- ggtree version of plotTree.Rβ18Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM fileβ25Updated 3 years ago
- repo for cicese metatranscriptomics workshop, nov 2018β14Updated 5 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Dataβ11Updated last year
- akutils with massive updates over v1.1 to functionality and command line interface.β15Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalogβ20Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.β27Updated 3 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfoβ¦β20Updated 6 years ago
- Microbiome researchβ21Updated 3 years ago
- β23Updated 7 years ago