twbattaglia / koeken
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
☆26Updated 7 years ago
Alternatives and similar repositories for koeken:
Users that are interested in koeken are comparing it to the libraries listed below
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- ☆23Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆36Updated 10 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 9 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ☆12Updated last month
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 8 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Visualization tool for genetic reassortment☆21Updated 3 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- ☆20Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 9 months ago
- Talk to the NCBI EUtils☆21Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Updated 5 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆22Updated 4 years ago