twbattaglia / koekenLinks
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
☆26Updated 8 years ago
Alternatives and similar repositories for koeken
Users that are interested in koeken are comparing it to the libraries listed below
Sorting:
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- ☆41Updated 7 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated 7 months ago
- R shiny app for interactive microbiome analysis☆56Updated 4 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 weeks ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago
- Visualization tool for genetic reassortment☆21Updated 5 months ago
- ☆23Updated 3 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Repository of the integrated mouse gut metagenomic catalog☆19Updated 3 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago