twbattaglia / koekenLinks
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
β26Updated 8 years ago
Alternatives and similar repositories for koeken
Users that are interested in koeken are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated 2 years ago
- A shiny package for microbiome functional enrichment analysisβ36Updated 5 months ago
- A microbial profiling framework for metagenomic analysisβ24Updated 5 years ago
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- Advanced metagenomic Sequence Analysis in Rβ15Updated 7 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq dataβ16Updated 2 months ago
- A reference viral database (RVDB)β26Updated 6 years ago
- ggtree version of plotTree.Rβ18Updated 6 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairsβ52Updated this week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018β14Updated 5 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)β18Updated 3 years ago
- β41Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profilesβ38Updated last year
- Visualization tool for genetic reassortmentβ21Updated 5 months ago
- A command line tool to compute mapping statistics from a BAM fileβ24Updated 3 years ago
- Evolutionary Transcriptomics with Rβ45Updated 3 weeks ago
- DensityMap is perl tool for the visualization of features density along chromosomesβ19Updated 3 years ago
- β23Updated 7 years ago
- Portable WDL workflows for IDseq production pipelinesβ32Updated 3 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencingβ11Updated 6 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studiesβ32Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β22Updated last year
- Statistical analysis for sparse high-throughput sequencingβ69Updated 9 months ago
- Nanopore data analysis in Rβ40Updated 2 years ago
- β19Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β33Updated 2 years ago
- Pipeline to run qiime2 with snakemakeβ16Updated 5 years ago