twbattaglia / koekenLinks
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
☆26Updated 8 years ago
Alternatives and similar repositories for koeken
Users that are interested in koeken are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 2 weeks ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Visualization tool for genetic reassortment☆21Updated 2 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Updated 10 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 2 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- Evolutionary Transcriptomics with R☆47Updated last month
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- ☆23Updated 7 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated 2 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- ☆63Updated 5 years ago
- ☆15Updated 3 months ago
- R shiny app for interactive microbiome analysis☆56Updated 7 months ago