twbattaglia / koeken
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
☆26Updated 8 years ago
Alternatives and similar repositories for koeken:
Users that are interested in koeken are comparing it to the libraries listed below
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- ☆23Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 9 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ☆13Updated 2 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 10 months ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Updated 7 years ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated this week
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 11 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 9 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- ☆40Updated 7 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Database of genomes integrated from the gut microbiome and other environments☆43Updated 2 years ago