Alternatives and similar repositories for Co-occurrence_Network_Analysis:

Users that are interested in Co-occurrence_Network_Analysis are comparing it to the libraries listed below

• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆160Updated last month
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆70Updated 2 years ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆24Updated last month
• mestaki / qiime2-to-BugBase
  ☆12Updated 3 years ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆66Updated 4 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 5 years ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆25Updated 4 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆43Updated 2 years ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated last year
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆49Updated 7 months ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 8 months ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆25Updated 5 years ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆114Updated 3 weeks ago
• danknights / sourcetracker
  ☆71Updated last year
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆45Updated 3 years ago
• statdivlab / radEmu
  ☆51Updated this week
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 3 weeks ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 3 months ago
• spxuw / DKI
  ☆34Updated 10 months ago
• jaeyunsung / GMHI_2020
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆33Updated 4 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆53Updated last week
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆28Updated 6 months ago
• knights-lab / BugBase
  ☆39Updated 7 years ago
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 5 years ago
• ChengGaoBerkeley / EPICON.Mycobiome
  ☆13Updated 3 years ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆59Updated 2 years ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago