R and python scripts for correlation-based network analysis
☆62May 17, 2020Updated 6 years ago
Alternatives and similar repositories for Co-occurrence_Network_Analysis
Users that are interested in Co-occurrence_Network_Analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 9 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆466Feb 13, 2026Updated 7 months ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- ☆12Oct 28, 2021Updated 4 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Dec 16, 2024Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆27Apr 22, 2020Updated 6 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- ☆14Jul 21, 2026Updated 2 months ago
- ☆24May 6, 2020Updated 6 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Sep 20, 2026Updated last week
- Code, unit tests, and tutorials for running PICRUSt2☆398Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Microbial ecological network visualization clustering☆156Nov 20, 2025Updated 10 months ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- A short tutorial for Tax4Fun2☆27Aug 24, 2024Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- metag-rev-sup☆23Jun 21, 2017Updated 9 years ago
- ☆20Dec 7, 2020Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆76Dec 28, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 7 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- ☆18May 27, 2026Updated 4 months ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Feb 7, 2018Updated 8 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago