mestaki / qiime2-to-BugBase
☆12Updated 3 years ago
Alternatives and similar repositories for qiime2-to-BugBase
Users that are interested in qiime2-to-BugBase are comparing it to the libraries listed below
Sorting:
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 10 months ago
- ☆49Updated 4 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆14Updated this week
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆44Updated 6 months ago
- ☆14Updated 10 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 6 months ago
- R implementation of the LEfSe method☆58Updated 3 weeks ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ☆26Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- ☆20Updated 4 years ago
- functions for analyzing phyloseq data☆27Updated 3 months ago
- ☆74Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago