A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
☆12Nov 1, 2018Updated 7 years ago
Alternatives and similar repositories for GWAS-scRNAseq-Integration
Users that are interested in GWAS-scRNAseq-Integration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 7 months ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 7 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- ChromSCape☆14Jul 30, 2025Updated last year
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Mar 20, 2023Updated 3 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆17May 18, 2023Updated 3 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆23May 27, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Easily download publicly available GWAS summary statistics.☆79Dec 3, 2023Updated 2 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Jul 30, 2026Updated last month
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆21Sep 6, 2021Updated 4 years ago
- ☆18Aug 19, 2019Updated 7 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- Examples using R and 1000 genomes data☆29May 18, 2021Updated 5 years ago
- ☆22Apr 28, 2022Updated 4 years ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆27Mar 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- A tool to plot significant regions of GWAS☆30Jan 27, 2023Updated 3 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Jun 28, 2016Updated 10 years ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 5 years ago
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 4 years ago
- An R package for generating comparative regional association plots☆17Sep 30, 2025Updated 11 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆40Oct 10, 2023Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆81Nov 23, 2025Updated 9 months ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- SCALLOP-INF analysis☆21Jul 7, 2026Updated last month
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Type 2 diabetes and dementia in the Health and Retirement Study: A Mendelian randomization approach☆16Feb 23, 2023Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 6 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year