A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
☆12Nov 1, 2018Updated 7 years ago
Alternatives and similar repositories for GWAS-scRNAseq-Integration
Users that are interested in GWAS-scRNAseq-Integration are comparing it to the libraries listed below
Sorting:
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated last month
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 10 years ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆19Apr 26, 2024Updated last year
- ☆22Apr 28, 2022Updated 3 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 2 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated 11 months ago
- Type 2 diabetes and dementia in the Health and Retirement Study: A Mendelian randomization approach☆16Feb 23, 2023Updated 3 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- Easily download publicly available GWAS summary statistics.☆78Dec 3, 2023Updated 2 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Connecting GWAS summary data to analytical tools☆23Mar 25, 2024Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 6 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆67Nov 23, 2025Updated 3 months ago
- ☆21Nov 15, 2024Updated last year
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Sep 6, 2021Updated 4 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Jun 28, 2016Updated 9 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Jul 6, 2023Updated 2 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 7 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Examples using R and 1000 genomes data☆29May 18, 2021Updated 4 years ago
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- lhcMR☆26Mar 24, 2024Updated last year
- Script tools for downloading, data preprocessing, data merging and standardizing for FDA Adverse Event Reporting System(FAERS) dataset.☆37Apr 4, 2019Updated 6 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Tutorial for running Mendelian Randomization analysis using R☆35Apr 29, 2024Updated last year
- Coding Genome Reconstruction using Iso-Seq data☆61Oct 20, 2021Updated 4 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Jun 15, 2018Updated 7 years ago