theislab / GWAS-scRNAseq-IntegrationLinks
A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
☆12Updated 6 years ago
Alternatives and similar repositories for GWAS-scRNAseq-Integration
Users that are interested in GWAS-scRNAseq-Integration are comparing it to the libraries listed below
Sorting:
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- ☆40Updated 7 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 4 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆16Updated 5 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- ☆18Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 2 years ago
- ☆44Updated 6 years ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- ☆16Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆52Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- ☆17Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- GWAS genetics Fine-mapping method☆24Updated 9 months ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- ☆16Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 6 years ago