Gibbons-Lab / pipelines
Pipelines used in the lab.
☆11Updated 3 months ago
Alternatives and similar repositories for pipelines:
Users that are interested in pipelines are comparing it to the libraries listed below
- ☆37Updated last month
- ☆57Updated 3 weeks ago
- ☆17Updated 2 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- ☆47Updated 9 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 3 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆33Updated 3 weeks ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆28Updated last year
- KEGG Module Evaluation Tool☆27Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- ☆16Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- ☆40Updated 5 months ago
- Tool to estimate genome quality of microbial eukaryotes☆35Updated this week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- PHANOTATE: a tool to annotate phage genomes.☆71Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆40Updated last year
- BEAV: Bacterial Element Annotation reVamped☆60Updated 2 months ago
- ☆42Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- ☆28Updated last year
- ☆28Updated 10 months ago