Gibbons-Lab / pipelinesLinks
Pipelines used in the lab.
☆15Updated 9 months ago
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below
Sorting:
- ☆81Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- ☆64Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- ☆56Updated 6 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Bioinformatics Tools☆90Updated this week
- ARG normalization by mapping to the ARO ontology.☆62Updated 5 months ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆100Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆36Updated 8 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆84Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- ☆61Updated last year
- Pipeline for major biological analyses.☆36Updated 3 years ago
- ☆24Updated 7 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 8 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated last week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆17Updated 5 years ago