rdpstaff / fungene_pipelineLinks
Scripts and resources for analyzing sequence data for select eco-functional genes
☆20Updated 8 years ago
Alternatives and similar repositories for fungene_pipeline
Users that are interested in fungene_pipeline are comparing it to the libraries listed below
Sorting:
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 10 months ago
- ☆20Updated 8 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- ☆16Updated 2 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- ☆14Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- ☆18Updated 3 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 2 weeks ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆15Updated 2 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆64Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- ☆11Updated last year
- Discover and annotate the virome☆45Updated 3 weeks ago