rdpstaff / fungene_pipelineView external linksLinks
Scripts and resources for analyzing sequence data for select eco-functional genes
☆20May 25, 2017Updated 8 years ago
Alternatives and similar repositories for fungene_pipeline
Users that are interested in fungene_pipeline are comparing it to the libraries listed below
Sorting:
- ☆20Jan 12, 2017Updated 9 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- ☆11Mar 10, 2024Updated last year
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 13 years ago
- Making Metagenomes Manageable☆12Apr 4, 2017Updated 8 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Collection of commonly used RDP Tools for easy building☆51Jun 8, 2023Updated 2 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 7 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 2 weeks ago
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Dec 21, 2022Updated 3 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 12 years ago
- 历史文档备份(2023年)☆19Dec 19, 2023Updated 2 years ago
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- SourceTracker2☆85Jul 10, 2024Updated last year
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆45Jun 25, 2020Updated 5 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Nov 25, 2025Updated 2 months ago
- Tool to easily install QIIME's dependencies on Linux systems☆33Oct 14, 2015Updated 10 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 11 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆52May 14, 2025Updated 9 months ago
- ☆18Nov 16, 2015Updated 10 years ago
- a user-friendly and flexible pipeline for prokaryote genome analysis☆69Jan 26, 2026Updated 3 weeks ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- R and python scripts for correlation-based network analysis☆62May 17, 2020Updated 5 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 8 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago