rdpstaff / fungene_pipelineLinks
Scripts and resources for analyzing sequence data for select eco-functional genes
☆20Updated 8 years ago
Alternatives and similar repositories for fungene_pipeline
Users that are interested in fungene_pipeline are comparing it to the libraries listed below
Sorting:
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- ☆20Updated 8 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆40Updated 4 years ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆33Updated 3 weeks ago
- Microbial Populations as Clusters Of Gene Transfer☆43Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 8 months ago
- ☆14Updated 7 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆20Updated last year
- scripts for microbiome analysis☆11Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago