Scripts and resources for analyzing sequence data for select eco-functional genes
☆20May 25, 2017Updated 9 years ago
Alternatives and similar repositories for fungene_pipeline
Users that are interested in fungene_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jan 12, 2017Updated 9 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- Tool to easily install QIIME's dependencies on Linux systems☆34Oct 14, 2015Updated 10 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a user-friendly and flexible pipeline for prokaryote genome analysis☆68Mar 17, 2026Updated 2 months ago
- Collection of commonly used RDP Tools for easy building☆52Jun 8, 2023Updated 2 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆61Dec 21, 2022Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- 生信常用分析☆14Aug 2, 2020Updated 5 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- 历史文档备份(2023年)☆19Dec 19, 2023Updated 2 years ago
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Nov 25, 2025Updated 6 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 3 months ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 13 years ago
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- ☆16Jan 12, 2026Updated 4 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 6 months ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- ☆13May 22, 2026Updated last week
- Making Metagenomes Manageable☆12Apr 4, 2017Updated 9 years ago
- a greta extension for generalised additive modelling using mgcv☆11Jan 14, 2025Updated last year
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆54May 14, 2025Updated last year