MadsAlbertsen / multi-metagenomeLinks
Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
☆80Updated 9 years ago
Alternatives and similar repositories for multi-metagenome
Users that are interested in multi-metagenome are comparing it to the libraries listed below
Sorting:
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- ☆83Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 2 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated last week
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 8 months ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week
- Development version of Easyfig☆100Updated last year
- Making whole bacterial genome sequencing data analysis easy☆112Updated 5 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- IS mapping software☆56Updated 3 years ago
- ☆23Updated 7 years ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 2 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 5 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago