MadsAlbertsen / multi-metagenomeLinks
Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
☆81Updated 9 years ago
Alternatives and similar repositories for multi-metagenome
Users that are interested in multi-metagenome are comparing it to the libraries listed below
Sorting:
- ☆82Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- ☆60Updated 5 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Rapid and scalable correlation estimation for compositional data☆87Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- ☆49Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- IS mapping software☆54Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated last year
- Micro 612 genomics workshop☆37Updated 4 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 11 months ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago