MadsAlbertsen / multi-metagenomeLinks
Scripts and tutorials on how to assemble individual microbial genomes from metagenomes
☆80Updated 9 years ago
Alternatives and similar repositories for multi-metagenome
Users that are interested in multi-metagenome are comparing it to the libraries listed below
Sorting:
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆95Updated last year
- ☆84Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 11 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 2 weeks ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- Making whole bacterial genome sequencing data analysis easy☆114Updated 8 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- Rapid and scalable correlation estimation for compositional data☆96Updated last year
- Development version of Easyfig☆103Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆64Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Micro 612 genomics workshop☆38Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated last week
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Updated 2 weeks ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated last month
- ☆23Updated 7 years ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- IS mapping software☆57Updated 4 years ago