AllenCellModeling / actkLinks
Automated Cell Toolkit
☆24Updated 4 years ago
Alternatives and similar repositories for actk
Users that are interested in actk are comparing it to the libraries listed below
Sorting:
- Python API and Jupyter widget for Vitessce☆50Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- Read fcs files.☆13Updated 6 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated 2 weeks ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Fast reconstruction of spatial networks from bioimages.☆25Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆29Updated last week
- Framework for image and flow cytometry analysis☆28Updated last week
- Optimal gating strategies for flow and mass cytometry.☆13Updated 3 months ago
- Build contrasts for models defined with formulaic☆13Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆40Updated last week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- ☆29Updated last year
- ☆27Updated 9 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- RAnking Markers for CEll Segmentation☆12Updated 3 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Deep learning based spot detection for FISH images.☆23Updated 2 months ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆33Updated 3 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last month
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 10 months ago
- ☆66Updated this week
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆48Updated 3 months ago
- A Python package for single-cell spatial image analysis.☆18Updated last year
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆20Updated 3 weeks ago
- Interactive visualization of spatial omics data☆64Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- The complete FlowSOM package known from R, now available in Python!☆22Updated last week
- Shadow objects for AnnData and MuData (experimental)☆12Updated 5 months ago