AllenCellModeling / actkLinks
Automated Cell Toolkit
☆24Updated last month
Alternatives and similar repositories for actk
Users that are interested in actk are comparing it to the libraries listed below
Sorting:
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 3 weeks ago
- Python API and Jupyter widget for Vitessce☆59Updated last week
- Fast reconstruction of spatial networks from bioimages.☆25Updated 6 months ago
- Framework for image and flow cytometry analysis☆31Updated last month
- Read fcs files.☆12Updated last week
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 5 months ago
- ☆13Updated 2 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆40Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- ☆18Updated last year
- ☆29Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 3 months ago
- Deep learning based spot detection for FISH images.☆25Updated 2 months ago
- Interactive visualization of spatial omics data☆72Updated last week
- Optimal gating strategies for flow and mass cytometry.☆16Updated 2 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- ☆18Updated 5 months ago
- ☆27Updated last year
- 3D segmentation for cells and organoids of 3D multichannel images☆25Updated 4 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Automatically annotate cell types, consistently across samples.☆17Updated last week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- Command-line client for Fractal☆47Updated this week
- Static plotting for spatialdata☆71Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last year
- ☆77Updated last week