JaneliaSciComp / multifishLinks
EASI-FISH analysis pipeline for spatial transcriptomics
☆35Updated 7 months ago
Alternatives and similar repositories for multifish
Users that are interested in multifish are comparing it to the libraries listed below
Sorting:
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 2 weeks ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆48Updated last week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- StarDist plugin for napari☆38Updated 10 months ago
- ☆50Updated last month
- Tools for distributed alignment of massive images☆82Updated this week
- ☆12Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last month
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Lectures for a napari training course☆50Updated last year
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- MethodsJ2☆14Updated 3 years ago
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 8 months ago
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Browse your OMERO database from within napari.☆37Updated 2 weeks ago
- ☆16Updated 10 months ago
- The 2023 version of cellPLATO☆15Updated 7 months ago
- ☆81Updated 3 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month