EASI-FISH analysis pipeline for spatial transcriptomics
☆36Apr 15, 2026Updated last month
Alternatives and similar repositories for multifish
Users that are interested in multifish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- Tools for distributed alignment of massive images☆95Apr 22, 2026Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆52Feb 4, 2025Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 8 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated last month
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 10 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated 11 months ago
- ☆13Feb 27, 2024Updated 2 years ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- ☆18May 7, 2026Updated last week
- ☆15Apr 2, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Package for removing motion artifacts from two-channel imaging☆11Aug 29, 2023Updated 2 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆67Mar 12, 2025Updated last year
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated last month
- ☆49Mar 1, 2018Updated 8 years ago
- Develop custom oligo design pipelines.☆28May 12, 2026Updated last week
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated last month
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- python library for particles tracking in 2D+t and 3D+t scientific images☆17Jun 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Place to discuss the future design of a universal microscope hardware interface☆16May 18, 2021Updated 5 years ago
- nf-tencentcloud is a nextflow plugin designed to add Tencent Cloud Object storage and Tencent Healthcare Omics Platform executor adaptati…☆18Jul 7, 2025Updated 10 months ago
- Create web-based OME-Zarr galleries☆25Apr 21, 2026Updated 3 weeks ago
- MERFISH decoding software☆26Aug 16, 2025Updated 9 months ago
- ☆53Apr 1, 2021Updated 5 years ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆76May 4, 2026Updated 2 weeks ago
- Problem sets and materials for systems and computational neuroscience course☆16Apr 25, 2026Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated last year
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆239May 13, 2026Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆174Updated this week
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Aug 1, 2021Updated 4 years ago
- starfish: unified pipelines for image-based transcriptomics☆248May 11, 2026Updated last week
- ☆15Feb 28, 2022Updated 4 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 7 months ago