JaneliaSciComp / multifishLinks
EASI-FISH analysis pipeline for spatial transcriptomics
☆35Updated 7 months ago
Alternatives and similar repositories for multifish
Users that are interested in multifish are comparing it to the libraries listed below
Sorting:
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 5 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Toolbox for the analysis of smFISH images.☆68Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- Interactive visualization of spatial omics data☆61Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆48Updated 3 weeks ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- ☆84Updated 3 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆91Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Lectures for a napari training course☆50Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆142Updated 4 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- A relabeling tool for tiled segmentation with Dask☆16Updated 9 months ago
- Threshold independent detection and localization of diffraction-limited spots.☆34Updated 2 years ago
- Multiple-choice microscopy pipeline☆133Updated 4 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated 11 months ago
- ☆12Updated last year
- Raw format to OME-TIFF converter☆54Updated last month