Alternatives and similar repositories for multifish:

Users that are interested in multifish are comparing it to the libraries listed below

• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆41Updated 4 months ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated 3 weeks ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆17Updated last month
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆23Updated last year
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated last year
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆45Updated last week
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 4 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆50Updated this week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆35Updated 7 months ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆14Updated 2 years ago
• maweigert / spotipy
  ☆12Updated 9 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated this week
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 2 years ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆14Updated 3 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• haesleinhuepf / devbio-napari
  ☆46Updated 4 months ago
• peng-lab / BaSiCPy
  ☆68Updated 2 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated last month
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated 11 months ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆36Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆70Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 6 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆35Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated last month