Alternatives and similar repositories for multifish

Users that are interested in multifish are comparing it to the libraries listed below

• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated 6 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆64Updated last week
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆68Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 3 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆92Updated this week
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆48Updated 2 weeks ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆37Updated 2 months ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆17Updated 2 years ago
• maweigert / spotipy
  ☆12Updated last year
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆58Updated 2 months ago
• KerenLab / CellSighter
  ☆33Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆85Updated 2 weeks ago
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆16Updated last year
• peng-lab / BaSiCPy
  ☆85Updated 4 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated 2 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• BIOP / abba_python
  ABBA, controlled from python
  ☆15Updated 4 months ago
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated 10 months ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆21Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 6 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆134Updated 5 years ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 9 months ago