Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
☆33Apr 28, 2026Updated this week
Alternatives and similar repositories for multiview-reconstruction
Users that are interested in multiview-reconstruction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆80Apr 22, 2026Updated last week
- Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016☆19Jan 26, 2019Updated 7 years ago
- Running compute-intense parts of BigStitcher distributed☆30Apr 24, 2026Updated last week
- ImgLib2-based viewer for registered SPIM stacks and more☆42Mar 20, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- ImageJ plugins for blind decomposition of fluorencence microscopy data☆10Mar 24, 2015Updated 11 years ago
- Janelia Workstation☆28Apr 15, 2026Updated 2 weeks ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Oct 10, 2022Updated 3 years ago
- ☆18Nov 25, 2025Updated 5 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated last year
- ImageJ convenience layer for N5☆19Updated this week
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 5 years ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated last month
- Noise Correction Algorithm for sCMOS cameras☆28Jan 15, 2020Updated 6 years ago
- Lattice light-sheet post-processing utility.☆30Apr 6, 2026Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆52Feb 4, 2025Updated last year
- C and NVidia CUDA code for multi-view deconvolution☆12Jul 25, 2016Updated 9 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 4 years ago
- ☆53Apr 20, 2026Updated last week
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Apr 7, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 4 years ago
- Implementation of the hierarchical smooth algorithm applicable to voxelated images of interface networks ( grain boundaries, soap foam, e…☆10Aug 4, 2021Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated 2 years ago
- ☆12Jun 29, 2021Updated 4 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 3 months ago
- ☆21Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆73Apr 6, 2026Updated 3 weeks ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 3 years ago
- ☆24Sep 13, 2025Updated 7 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 6 months ago
- TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software☆53Apr 24, 2026Updated last week
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 3 months ago