Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
☆34Aug 5, 2026Updated this week
Alternatives and similar repositories for multiview-reconstruction
Users that are interested in multiview-reconstruction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 15, 2026Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆83Jul 3, 2026Updated last month
- Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016☆19Jan 26, 2019Updated 7 years ago
- Running compute-intense parts of BigStitcher distributed☆31Updated this week
- ImgLib2-based viewer for registered SPIM stacks and more☆44Jul 23, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- ImageJ plugins for blind decomposition of fluorencence microscopy data☆10Mar 24, 2015Updated 11 years ago
- Janelia Workstation☆28Jul 28, 2026Updated 2 weeks ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Updated this week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆23Apr 1, 2025Updated last year
- ☆18Nov 25, 2025Updated 8 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆37Oct 10, 2022Updated 3 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Jun 6, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 6 years ago
- Noise Correction Algorithm for sCMOS cameras☆28Jan 15, 2020Updated 6 years ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 5 months ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- Lattice light-sheet post-processing utility.☆30Aug 3, 2026Updated last week
- C and NVidia CUDA code for multi-view deconvolution☆12Jul 25, 2016Updated 10 years ago
- ☆55Jul 27, 2026Updated 2 weeks ago
- TensorFlow Deconvolution for Microscopy Data☆93Apr 29, 2022Updated 4 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆54Feb 4, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A convex 3D deconvolution algorithm for low photon count fluorescence imaging☆34Feb 9, 2022Updated 4 years ago
- CLIJ is deprecated. Visit CLIJ2☆57Jun 12, 2021Updated 5 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 6 years ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 5 years ago
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- ImageJ convenience layer for N5☆21Jun 29, 2026Updated last month
- Implementation of the hierarchical smooth algorithm applicable to voxelated images of interface networks ( grain boundaries, soap foam, e…☆10Aug 4, 2021Updated 5 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated 2 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Updated this week
- ☆12Jun 29, 2021Updated 5 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆74Aug 3, 2026Updated last week
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Denoising via adaptive binning.☆14Jan 6, 2026Updated 7 months ago
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 4 years ago
- ☆24Sep 13, 2025Updated 10 months ago