Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
☆33Mar 27, 2026Updated 2 weeks ago
Alternatives and similar repositories for multiview-reconstruction
Users that are interested in multiview-reconstruction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆80Mar 24, 2026Updated 2 weeks ago
- Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016☆19Jan 26, 2019Updated 7 years ago
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- ImgLib2-based viewer for registered SPIM stacks and more☆42Mar 20, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- ImageJ plugins for blind decomposition of fluorencence microscopy data☆10Mar 24, 2015Updated 11 years ago
- Janelia Workstation☆27Mar 24, 2026Updated 2 weeks ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Mar 30, 2026Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Oct 10, 2022Updated 3 years ago
- ☆18Nov 25, 2025Updated 4 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated last year
- ImageJ convenience layer for N5☆19Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 10 months ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 5 years ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated last month
- Lattice light-sheet post-processing utility.☆30Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- C and NVidia CUDA code for multi-view deconvolution☆12Jul 25, 2016Updated 9 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- ☆51Dec 9, 2025Updated 4 months ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Mar 12, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A convex 3D deconvolution algorithm for low photon count fluorescence imaging☆34Feb 9, 2022Updated 4 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 4 years ago
- Implementation of the hierarchical smooth algorithm applicable to voxelated images of interface networks ( grain boundaries, soap foam, e…☆10Aug 4, 2021Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated 2 years ago
- ☆12Jun 29, 2021Updated 4 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆21Mar 11, 2026Updated last month
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆73Updated this week
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 3 years ago
- ☆24Sep 13, 2025Updated 6 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 6 months ago
- TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software☆53Apr 1, 2026Updated last week