Develop custom oligo design pipelines.
☆27Mar 3, 2026Updated last week
Alternatives and similar repositories for oligo-designer-toolsuite
Users that are interested in oligo-designer-toolsuite are comparing it to the libraries listed below
Sorting:
- A napari plugin for counting organoids from brightfield microscopy images with deep learning☆14Feb 26, 2026Updated last week
- Explainability for Random Forest Models.☆32Jan 23, 2026Updated last month
- Web Interface for Wind Speed Prediction☆20Apr 17, 2023Updated 2 years ago
- Propulate is an asynchronous population-based optimization algorithm and software package for global optimization and hyperparameter sear…☆44Mar 2, 2026Updated last week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 4 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- A flexible template, as a quick setup for deep learning projects in pytorch-lightning☆48Oct 26, 2023Updated 2 years ago
- BrainLes tutotrials☆11Jul 25, 2025Updated 7 months ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- preprocessing tools for multi-modal 3D brain imaging☆30Jan 29, 2026Updated last month
- Spatial analysis of FISH data☆33May 20, 2025Updated 9 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆32Feb 25, 2026Updated last week
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- blob loss example implementation☆36Aug 3, 2024Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Nov 18, 2024Updated last year
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated 10 months ago
- CAST package☆42Oct 26, 2024Updated last year
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆25Sep 23, 2024Updated last year
- A python package for semi-structured deep distributional regression☆23Dec 9, 2022Updated 3 years ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆23Jul 18, 2022Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- ☆25Feb 25, 2025Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆100Sep 23, 2025Updated 5 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- ☆53Apr 1, 2021Updated 4 years ago
- Self-explanatory tutorials for different model-agnostic and model-specific XAI methods☆67Feb 26, 2026Updated last week
- MERFISH decoding software☆26Aug 16, 2025Updated 6 months ago
- An Optimized Nested TAD caller for Hi-C data☆25Jun 30, 2021Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Oct 1, 2023Updated 2 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- ☆10Jul 10, 2024Updated last year
- Interactive and integrated analysis of multiplexed tissue microarrays☆14Mar 2, 2026Updated last week
- spatial transcriptome, single cell☆73Mar 18, 2023Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- overview of spatial datasets☆79Feb 19, 2024Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Apr 1, 2025Updated 11 months ago