HelmholtzAI-Consultants-Munich / oligo-designer-toolsuiteLinks
Develop custom oligo design pipelines.
☆21Updated this week
Alternatives and similar repositories for oligo-designer-toolsuite
Users that are interested in oligo-designer-toolsuite are comparing it to the libraries listed below
Sorting:
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆27Updated 10 months ago
- ☆29Updated last year
- ☆18Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated this week
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated 2 months ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 9 months ago
- ☆38Updated last year
- ☆57Updated this week
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Updated 11 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆51Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆42Updated last month
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Image Mass Cytometry analysis pipeline☆26Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 4 months ago
- Spatially aware dimension reduction for spatial transcriptomics.☆53Updated 5 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated last month
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- Spatial omics analysis and visualization library☆15Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Spatial analysis of FISH data☆31Updated 3 months ago
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆26Updated 2 years ago
- ☆28Updated 10 months ago
- MRtree R implementation☆12Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 3 years ago
- ☆22Updated 3 years ago