HelmholtzAI-Consultants-Munich / oligo-designer-toolsuiteLinks
Develop custom oligo design pipelines.
☆25Updated last week
Alternatives and similar repositories for oligo-designer-toolsuite
Users that are interested in oligo-designer-toolsuite are comparing it to the libraries listed below
Sorting:
- ☆29Updated last year
- ☆19Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated 2 weeks ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- MRtree R implementation☆12Updated 2 years ago
- Tools to handle IMC data☆24Updated 3 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- ☆30Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆23Updated last week
- ☆27Updated last year
- ☆62Updated last week
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated last month
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆29Updated 2 weeks ago
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- Spatial analysis of FISH data☆34Updated 7 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆25Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆24Updated last month
- Identification of spatial homogeneous regions☆21Updated 2 months ago
- Image Mass Cytometry analysis pipeline☆26Updated 6 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 4 months ago
- Spatial omics analysis and visualization library☆22Updated last week
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- ☆22Updated 3 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated last week
- Repository for storing prototype functionality implementations for the BKP☆38Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 8 months ago