Open-Science-Tools / nd2readerLinks
Pure Python library for reading NIS Elements ND2 images and metadata
☆47Updated 6 months ago
Alternatives and similar repositories for nd2reader
Users that are interested in nd2reader are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆144Updated 5 months ago
- ☆85Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated this week
- Lectures for a napari training course☆50Updated last year
- native Python dataclasses for the OME data model☆58Updated last month
- Browse your OMERO database from within napari.☆38Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆95Updated last month
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 7 months ago
- ☆51Updated 3 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆66Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- ☆49Updated this week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- StarDist plugin for napari☆40Updated 11 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 6 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last month
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆165Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆31Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆48Updated 2 weeks ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆141Updated last month
- ☆37Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated this week