Open-Science-Tools / nd2readerLinks
Pure Python library for reading NIS Elements ND2 images and metadata
☆48Updated 10 months ago
Alternatives and similar repositories for nd2reader
Users that are interested in nd2reader are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Lectures for a napari training course☆51Updated 2 years ago
- ☆91Updated last month
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆74Updated this week
- ☆51Updated 7 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆109Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆36Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 11 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆174Updated 6 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 7 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆156Updated 3 months ago
- Browse your OMERO database from within napari.☆39Updated last week
- Cookiecutter for napari plugins☆71Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆95Updated this week
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- StarDist plugin for napari☆38Updated last year
- native Python dataclasses for the OME data model☆64Updated last week
- ☆12Updated last year
- Command-line client for Fractal☆47Updated last week
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated last week