Pure Python library for reading NIS Elements ND2 images and metadata
☆49Jan 15, 2025Updated last year
Alternatives and similar repositories for nd2reader
Users that are interested in nd2reader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python nd2 reader based on the ND2 SDK☆17Jan 28, 2022Updated 4 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆32Oct 2, 2024Updated last year
- AICS Segmentation (One-Way) Mirror☆45Dec 16, 2020Updated 5 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Mar 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- under construction☆14Apr 20, 2017Updated 8 years ago
- AutoTx - an intelligent background file transfer service for Windows.☆28Mar 25, 2026Updated 2 weeks ago
- ☆20May 1, 2025Updated 11 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Apr 1, 2026Updated last week
- SIMcheck: ImageJ tools for assessing Structured Illumination Microscopy (SIM) data quality and reliability☆29Jan 27, 2021Updated 5 years ago
- Lattice light-sheet post-processing utility.☆30Updated this week
- A graphical user interface (GUI) for PIMS☆11Aug 12, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A python toolkit for fluorescence microscopy.☆22Dec 17, 2025Updated 3 months ago
- ☆13Feb 27, 2024Updated 2 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 5 months ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- Python control of micro-manager for customized data acquisition☆179Mar 13, 2026Updated 3 weeks ago
- Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.☆272Mar 31, 2025Updated last year
- Recipes for open microscopy☆12Dec 7, 2020Updated 5 years ago
- OME-TIFF IO in python☆27Apr 10, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ImageJ convenience layer for N5☆19Mar 24, 2026Updated 2 weeks ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Compilation of information and code bases related to open-source trackers for C. elegans☆14Apr 23, 2025Updated 11 months ago
- A hub to start the next generation of Microscope Control Software☆60Jan 7, 2021Updated 5 years ago
- Decorators to make it easier to write SciPy LowLevelCallables☆23Jan 11, 2021Updated 5 years ago
- STORM movie analysis code☆122Apr 2, 2026Updated last week
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- ☆12Jan 10, 2021Updated 5 years ago
- U-net based segmentation of nuclei in microscopy images☆55Sep 13, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- training materials related to data science and artificial intelligence, especially for life scientists☆16Sep 23, 2025Updated 6 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year
- Piecewise alignment for layers of mosaics☆46Feb 18, 2026Updated last month
- GPU accelerated image/volume processing in Python☆113Feb 10, 2026Updated last month
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆29Apr 3, 2026Updated last week
- MultiModal Big Image Data Sharing and Exploration☆19Jan 13, 2023Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆27Mar 17, 2021Updated 5 years ago