Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆34Aug 22, 2024Updated last year
Alternatives and similar repositories for npy2bdv
Users that are interested in npy2bdv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 3 weeks ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- ☆23Mar 26, 2021Updated 5 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- ☆24Sep 13, 2025Updated 6 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- ☆112Mar 19, 2026Updated last week
- ☆38May 6, 2024Updated last year
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆72Mar 2, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 4 months ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- Software for camera acquisition and tracking of particles☆11Nov 22, 2022Updated 3 years ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆108Updated this week
- Running compute-intense parts of BigStitcher distributed☆30Mar 18, 2026Updated last week
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 4 years ago
- Python control of micro-manager for customized data acquisition☆179Mar 13, 2026Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- GPU accelerated beam propagation tools for biological light tissue simulations☆38Sep 29, 2018Updated 7 years ago
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 11 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- Measurement control and analysis for super-resolution localization fluorescence microscopy☆15Feb 6, 2018Updated 8 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆46Mar 18, 2026Updated last week
- ☆18May 5, 2023Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- ☆13Apr 27, 2020Updated 5 years ago
- Particle tracking by solving linear assignment problem.☆63Mar 6, 2026Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 5 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year