nvladimus / npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆35Updated 8 months ago
Alternatives and similar repositories for npy2bdv:
Users that are interested in npy2bdv are comparing it to the libraries listed below
- python tools for BigDataViewer☆22Updated 4 months ago
- Process images using SimpleITK in napari☆20Updated this week
- ☆16Updated 2 years ago
- Use ImageJ functionality from napari☆31Updated last month
- Dataset EXploration & Processing☆32Updated last year
- my first baby steps with Napari☆10Updated 5 years ago
- ☆20Updated last year
- A napari plugin for zarr backed OME-NGFF images☆33Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- ☆17Updated this week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated this week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆71Updated 2 weeks ago
- ☆36Updated 11 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 weeks ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Lattice light-sheet post-processing utility.☆28Updated 3 weeks ago
- ☆20Updated 3 months ago
- Optimize image processing workflows in napari☆17Updated this week
- ☆39Updated this week
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- 1d plotting in napari-based canvas.☆26Updated last week
- ImageJ convenience layer for N5☆17Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ☆12Updated 4 years ago
- A self-supervised denoising algorithm.☆25Updated last year
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago