nvladimus / npy2bdvLinks
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆34Updated last year
Alternatives and similar repositories for npy2bdv
Users that are interested in npy2bdv are comparing it to the libraries listed below
Sorting:
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated last week
- Use ImageJ functionality from napari☆32Updated 3 months ago
- python tools for BigDataViewer☆22Updated last year
- ☆38Updated last year
- ☆24Updated 3 months ago
- ImageJ convenience layer for N5☆19Updated last month
- Dataset EXploration & Processing☆32Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- Process images using SimpleITK in napari☆23Updated 7 months ago
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated 2 weeks ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 8 months ago
- Lattice light-sheet post-processing utility.☆30Updated 3 weeks ago
- ☆22Updated 2 years ago
- Use Napari Viewer to display CZI images☆11Updated 3 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆44Updated 2 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last month
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated last month
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated 2 weeks ago
- ☆49Updated 3 weeks ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- StarDist plugin for napari☆38Updated last year
- Gamified image segmentation quality estimation☆19Updated 7 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago