nvladimus / npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆35Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for npy2bdv
- python tools for BigDataViewer☆21Updated last year
- A napari plugin for zarr backed OME-NGFF images☆28Updated 3 weeks ago
- ☆20Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆57Updated this week
- A 3D interactivity toolbox for napari☆32Updated last month
- ☆16Updated 2 years ago
- Use ImageJ functionality from napari☆25Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆60Updated 2 weeks ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- Dataset EXploration & Processing☆31Updated last year
- ☆17Updated 2 years ago
- ☆28Updated this week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆11Updated 3 years ago
- Process images using SimpleITK in napari☆19Updated last month
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- ☆19Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- Image acquisition software for mesoSPIM light-sheet microscopes.☆37Updated this week
- Optimize image processing workflows in napari☆17Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Running compute-intense parts of BigStitcher distributed☆20Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆22Updated 6 months ago
- A set of Qt-based widgets onto the pymmcore-plus model☆12Updated this week
- Things we use regularly☆29Updated 2 months ago
- A self-supervised denoising algorithm.☆24Updated 7 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated last year