nvladimus / npy2bdvLinks
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆34Updated last year
Alternatives and similar repositories for npy2bdv
Users that are interested in npy2bdv are comparing it to the libraries listed below
Sorting:
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆69Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆88Updated 2 weeks ago
- python tools for BigDataViewer☆22Updated 10 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- ☆23Updated last month
- Use ImageJ functionality from napari☆31Updated last month
- ☆38Updated last year
- Process images using SimpleITK in napari☆22Updated 5 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- my first baby steps with Napari☆10Updated 5 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆44Updated this week
- ☆19Updated 5 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 6 months ago
- Linking napari layers with Matplotlib plots☆42Updated last month
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- ImageJ convenience layer for N5☆17Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- A self-supervised denoising algorithm.☆27Updated last year
- ☆22Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- Dataset EXploration & Processing☆32Updated 2 years ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated 3 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Updated 6 months ago