nvladimus / npy2bdvLinks
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆35Updated 11 months ago
Alternatives and similar repositories for npy2bdv
Users that are interested in npy2bdv are comparing it to the libraries listed below
Sorting:
- python tools for BigDataViewer☆22Updated 7 months ago
- Process images using SimpleITK in napari☆21Updated 3 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last month
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Use ImageJ functionality from napari☆31Updated this week
- my first baby steps with Napari☆10Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 weeks ago
- ☆38Updated last year
- Dataset EXploration & Processing☆32Updated 2 years ago
- Use Napari Viewer to display CZI images☆11Updated 3 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆23Updated 4 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- ☆22Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- 1d plotting in napari-based canvas.☆26Updated last week
- ☆22Updated 2 weeks ago
- ImageJ convenience layer for N5☆17Updated this week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- A self-supervised denoising algorithm.☆27Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated last year
- ☆19Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago