nvladimus / npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
☆35Updated 7 months ago
Alternatives and similar repositories for npy2bdv:
Users that are interested in npy2bdv are comparing it to the libraries listed below
- python tools for BigDataViewer☆22Updated 3 months ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- ImageJ convenience layer for N5☆16Updated last week
- ☆20Updated 2 months ago
- ☆17Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- ☆16Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated last week
- my first baby steps with Napari☆10Updated 5 years ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated last week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Use ImageJ functionality from napari☆29Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ☆20Updated last year
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last month
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last week
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- ☆36Updated 11 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- Lattice light-sheet post-processing utility.☆28Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated this week
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆70Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago